Ccot007070.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
znf711
Assembly
GCA_001594065.1
Location
NW:40188-60380[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00015 0.009 15.8 8.2 1 23 21 43 21 43 0.98
2 28 0.0036 0.22 11.5 6.4 1 23 49 72 49 72 0.96
3 28 3.7e-05 0.0023 17.7 4.7 1 23 91 113 91 113 0.98
4 28 0.013 0.8 9.7 1.9 1 21 119 139 119 142 0.91
5 28 9e-05 0.0055 16.5 6.7 1 23 161 183 161 183 0.98
6 28 0.0036 0.22 11.5 5.4 1 23 189 212 189 212 0.97
7 28 3.7e-05 0.0023 17.7 4.7 1 23 231 253 231 253 0.98
8 28 0.013 0.8 9.7 1.9 1 21 259 279 259 282 0.91
9 28 9e-05 0.0055 16.5 6.7 1 23 301 323 301 323 0.98
10 28 0.037 2.3 8.3 7.2 1 23 329 352 329 352 0.97
11 28 1.5e-05 0.00091 19.0 6.6 1 23 371 393 371 393 0.99
12 28 0.0072 0.44 10.5 4.3 1 23 399 422 399 422 0.96
13 28 0.00014 0.0087 15.9 5.6 1 23 441 463 441 463 0.98
14 28 0.17 11 6.2 0.9 10 23 472 485 472 485 0.98
15 28 1.2 74 3.5 0.3 10 23 500 514 491 514 0.83
16 28 8.1e-06 0.0005 19.8 7.1 1 23 533 555 533 555 0.98
17 28 0.0026 0.16 11.9 4.5 1 23 561 584 561 584 0.96
18 28 0.0018 0.11 12.4 7.3 1 23 603 625 603 625 0.98
19 28 0.15 9.2 6.4 3.4 1 23 631 654 631 654 0.96
20 28 2.9e-05 0.0018 18.0 5.5 2 23 674 695 674 695 0.98
21 28 0.0018 0.11 12.4 4.3 1 21 701 721 701 724 0.90
22 28 5.7e-05 0.0035 17.1 4.1 1 23 743 765 743 765 0.99
23 28 5.3e-05 0.0033 17.2 1.0 1 23 771 794 771 794 0.97
24 28 2.8e-06 0.00017 21.3 5.4 1 23 813 835 813 835 0.99
25 28 0.0016 0.1 12.5 6.6 1 23 841 864 841 864 0.97
26 28 5.9e-06 0.00036 20.2 5.0 1 23 883 905 883 905 0.98
27 28 0.0026 0.16 11.9 1.0 1 21 911 931 911 934 0.91
28 28 1.4e-06 8.7e-05 22.2 1.5 1 23 953 975 953 975 0.99

Sequence Information

Coding Sequence
ATGCATTACAATAATGAACATTTCAAGTCTAATAAGGACCTATATACAAGAGGTGTATTACACAAATGcggaacgtgtaataaagagtttaagaaCAAAACGCATTTTCGTAACCACGAAAGAACTCATACAggcgaaaaaccttatcaatgcgagttttgtaaatataaatgtggGCAAAAGGTACATCTACGTAGACACATGGTATCAAAACATAAGGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTACACAAATGCGGAACGTGTAATAAGGAGTTTAAGTACAAAACGGATTTACGTAGCCATGAAAGAACTCATACAggcgaaaaaccttatcaatgcgaattttgtaaatataaatgtagGATAAATGGTAACTTAAGGCAGCATGTGGTGGCAATGCATAACAGTGATGAACGTTTCAAGTCTAATAAGGACCTATACATTGGAGGTATATCACACAAATGcggaacgtgtaataaagagtttaagtACAAAACGCAGTTTCGTAGACATGAAAGAACCCATACAggcgaaaaaccttatcaatgcgagttttgtaaatataaatgtggGCAAAAGGTACATCTACGTATACACATGATATCAAAACATAAGGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTACACAAATGCGGAACGTGTAATAAGGAGTTTAAGTACAAAACGGATTTACGTAGCCATGAAAGAACTCATACAggcgaaaaaccttatcaatgcgaattttgtaaatataaatgtagGATAAATGGTAACTTAAGGCAGCATGTGGTGGCAATGCATAACAGTGATGAACGTTTCAAGTCTAATAAGGACCTATACATTGGAGGTATATCACACAAATGcggaacgtgtaataaagagtttaagtACAAAACGCAGTTTCGTAGACATGAAAGAACCCATACAggcgaaaaaccttatcaatgcgagttttgtaaatataaatgtggGCAAAAGGTACATCTACATATACACATGATATCAAAACATAAGGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTATACAAATGCGaaacgtgtaataaagagtttaagaaCAAAACGCATTTTCGTAGCCACGAAAGAACTCATACAggcgaaaaaccttatcaatgcgaattttgtaaatataaatgtagGCAAAAGGTACAGCTAAGTAGTCACGTGATATCAAAACATAAGGGTGATGAACGTTTCAAGTTCAATAAGGACCTATATTCAGGAGGTGTATCACACAAATGcggaacgtgtaataaagGGTTTATAAACAAAGCGCATTTGCATATTCATGAGAGGACTCATATAGGCAACAAACCTTATCATTGGTTTAAGACTAATTGGAGTTTGCGTAGACACGAGAGAACTCATGAAAACGAAAAGCCTTATCAATGTGATATTCGTGGTCCCATGTCTAGGCAAAAGGTACATCTACGTATACACATGATATCAAAACATAAGGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTACACAAATGcggaacgtgtaataaagagtttaagaaCAAATCGCATTTACGTAGCCACGAAAGAACTCATACAggcgaaaaaccttatcaaTGCGAATTTTGTGAATATAAATGTAGGCAAAAGACACAGCTACGTAGTCACGTGATATCAAAGCATAAAGATCATGAACGTTTCAAGTCTAATAAGAATCTATACATTGGAGGTGTATCACACAAATGCGGAACGTGTAATAAGGAGTTTATATACAAAACGCATTTACATAGACATGAAATAACTCATACAGAGAAAAAACCTTATCAATGCGatttttgtaaagataaatttgcGCGAAAGGCACAGCTAAGTTGTCACATGATATCAAAACATAAGGATGATGAACGTTTCAAGTTTAATAAGGACCTATATGCAGGAGGTGTATTACGCAAATGcggaacgtgtaataaagagtttaagaaCAAAACGCATTTACGTAACCACGAAAGAACTCATACAGGCGAAAAACCTTATGTATGCGAATTCTGTAAACATAAATGTAGGACAAAAAGTAACTTAAGACAGCATGTGGTCGCAATGCATAACAGTGATGAACGTTTCAAGTCTAATAAGGACCTATACATTGGAGGTATAGCATACAAATGCGGAACGTGTAATAAGGAGTTTATGTACAAAACGCAGTTTCGTAGACATGAAAGAACCCATGCAggcgaaaaaccttatcaatgcgaattttgtgaaaaaaaatttagGCTGAAGATACAGCTAAGTAATCACATGATATCAATACATAACGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTATACAAATGcggaacgtgtaataaagagtttaagaaCAAAACGCATTTACGTAACCACGAAAGAACTCATACAGGCGAAAAACCTTATGTAtgcgaattttgtaaatataaatgtagGCAGAAGGTACATCTACGTACACACATGATATCAAAACATAAGGATGATGAACGTTTCAAGTCTAATAAGGACCTATATGCAGGAGGTGTATTACACAAATGCGGAACGTGTAATAAGGAGTTTAAGAACAAAACGAATTTACGTAGCCATGAAAGAACTCATACAggcgaaaaaccttatcaatgcgagttctgtaaatataaatatgggacaaaaaataacttaagTCAGCATGTGGTCGCAATGCATAACAGTGATGAACGTTTCAAGTCTAATAAGAATCTATACATTGGAGGTGTATCATACAAATGcggaacgtgtaataaagaatttaaggGCAAGGCGCAATTGAATAGGCATGAAAGAACTCATACAggcgaaaaaccttatcaatgcgaattttgtgaaaataaatatacgtga
Protein Sequence
MHYNNEHFKSNKDLYTRGVLHKCGTCNKEFKNKTHFRNHERTHTGEKPYQCEFCKYKCGQKVHLRRHMVSKHKDDERFKSNKDLYAGGVLHKCGTCNKEFKYKTDLRSHERTHTGEKPYQCEFCKYKCRINGNLRQHVVAMHNSDERFKSNKDLYIGGISHKCGTCNKEFKYKTQFRRHERTHTGEKPYQCEFCKYKCGQKVHLRIHMISKHKDDERFKSNKDLYAGGVLHKCGTCNKEFKYKTDLRSHERTHTGEKPYQCEFCKYKCRINGNLRQHVVAMHNSDERFKSNKDLYIGGISHKCGTCNKEFKYKTQFRRHERTHTGEKPYQCEFCKYKCGQKVHLHIHMISKHKDDERFKSNKDLYAGGVLYKCETCNKEFKNKTHFRSHERTHTGEKPYQCEFCKYKCRQKVQLSSHVISKHKGDERFKFNKDLYSGGVSHKCGTCNKGFINKAHLHIHERTHIGNKPYHWFKTNWSLRRHERTHENEKPYQCDIRGPMSRQKVHLRIHMISKHKDDERFKSNKDLYAGGVLHKCGTCNKEFKNKSHLRSHERTHTGEKPYQCEFCEYKCRQKTQLRSHVISKHKDHERFKSNKNLYIGGVSHKCGTCNKEFIYKTHLHRHEITHTEKKPYQCDFCKDKFARKAQLSCHMISKHKDDERFKFNKDLYAGGVLRKCGTCNKEFKNKTHLRNHERTHTGEKPYVCEFCKHKCRTKSNLRQHVVAMHNSDERFKSNKDLYIGGIAYKCGTCNKEFMYKTQFRRHERTHAGEKPYQCEFCEKKFRLKIQLSNHMISIHNDDERFKSNKDLYAGGVLYKCGTCNKEFKNKTHLRNHERTHTGEKPYVCEFCKYKCRQKVHLRTHMISKHKDDERFKSNKDLYAGGVLHKCGTCNKEFKNKTNLRSHERTHTGEKPYQCEFCKYKYGTKNNLSQHVVAMHNSDERFKSNKNLYIGGVSYKCGTCNKEFKGKAQLNRHERTHTGEKPYQCEFCENKYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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