Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:197290-212475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8e-05 0.0023 17.7 1.4 1 23 348 370 348 370 0.96

2 18 1.4e-05 0.00083 19.1 1.9 1 20 376 395 376 398 0.94

3 18 9.4e-06 0.00058 19.6 1.4 1 23 404 426 404 426 0.98

4 18 5.5e-05 0.0034 17.2 4.4 1 21 432 452 432 454 0.95

5 18 7.4e-06 0.00045 19.9 5.6 1 23 460 482 460 482 0.99

6 18 1.7e-05 0.001 18.8 5.3 1 23 488 510 488 510 0.97

7 18 6.4e-05 0.0039 17.0 6.9 1 23 516 538 516 538 0.96

8 18 6.3e-08 3.9e-06 26.4 2.7 1 23 544 566 544 566 0.98

9 18 4.6e-05 0.0029 17.4 6.7 1 23 572 594 572 594 0.97

10 18 1.4e-05 0.00088 19.0 5.8 1 23 600 622 600 622 0.98

11 18 3e-07 1.8e-05 24.3 2.8 1 23 628 650 628 650 0.98

12 18 5.7e-06 0.00035 20.3 7.8 1 23 656 678 656 678 0.98

13 18 1.8e-05 0.0011 18.7 9.1 1 23 684 706 684 706 0.98

14 18 2.3e-05 0.0014 18.3 7.5 1 23 712 734 712 734 0.98

15 18 0.0011 0.069 13.1 8.8 1 21 740 760 740 762 0.94

16 18 8.6e-06 0.00053 19.7 0.4 1 23 768 790 768 790 0.98

17 18 0.02 1.3 9.1 4.5 1 23 800 822 800 822 0.98

18 18 3.3e-07 2e-05 24.2 1.3 1 23 828 850 828 850 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8e-05	0.0023	17.7	1.4	1	23	348	370	348	370	0.96
2	18	1.4e-05	0.00083	19.1	1.9	1	20	376	395	376	398	0.94
3	18	9.4e-06	0.00058	19.6	1.4	1	23	404	426	404	426	0.98
4	18	5.5e-05	0.0034	17.2	4.4	1	21	432	452	432	454	0.95
5	18	7.4e-06	0.00045	19.9	5.6	1	23	460	482	460	482	0.99
6	18	1.7e-05	0.001	18.8	5.3	1	23	488	510	488	510	0.97
7	18	6.4e-05	0.0039	17.0	6.9	1	23	516	538	516	538	0.96
8	18	6.3e-08	3.9e-06	26.4	2.7	1	23	544	566	544	566	0.98
9	18	4.6e-05	0.0029	17.4	6.7	1	23	572	594	572	594	0.97
10	18	1.4e-05	0.00088	19.0	5.8	1	23	600	622	600	622	0.98
11	18	3e-07	1.8e-05	24.3	2.8	1	23	628	650	628	650	0.98
12	18	5.7e-06	0.00035	20.3	7.8	1	23	656	678	656	678	0.98
13	18	1.8e-05	0.0011	18.7	9.1	1	23	684	706	684	706	0.98
14	18	2.3e-05	0.0014	18.3	7.5	1	23	712	734	712	734	0.98
15	18	0.0011	0.069	13.1	8.8	1	21	740	760	740	762	0.94
16	18	8.6e-06	0.00053	19.7	0.4	1	23	768	790	768	790	0.98
17	18	0.02	1.3	9.1	4.5	1	23	800	822	800	822	0.98
18	18	3.3e-07	2e-05	24.2	1.3	1	23	828	850	828	850	0.97

Sequence Information

Coding Sequence: ATGCATTGCCAGCGACTACGCAGGCACAACAAGAGCTCGCATCATCAGCAACAGTCAACAGCCGCGCATCATCATCAGCCTTCAGttagcagcagcagcagccaTCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCTGGCCTTAATTTAGACGGCGCACATCTACCAGCGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAACAAATGCAGGCGCAAGCGCAGCAGCAGCTGCaccagcagcaacagcagcagccgcagcagcaacagcagcagcagtcTCATCATCAGATACCGAATCATCAGAACGCTCAGAACAATGGGCCAACGGCGCACGGCCAAAACGCGCAACGGGACGACAACAAAGTCAAGGACGAAGGCGGAAGTTGTACCACCGAGCGCTGCAGCGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGATCTTCAACAGACCTTGatgcaacagcagcagcagcaacaacagcagcagcagcaacagcagcagcagcagcagcagatTGGAGTCAACATCAGCGGTAATTCCACCACTGAGGGGGGAAGTCAGAATAACTCTGAGAAACccgaaaaagaaaaggaattgCGGCAATTGAATATGACCCaATTTCAAGTCCCTGACTTGAAACCAGGAGGACACATGATGGACGTGAGGACTGCAGACGGATCGGTTGTCAAAATTAGCGCAGGAAACGAGCAAGATTTGGCTAAGACTCTTGGCGTCGAAATGgtacaaaatatgtacaagGTTAATGTTGAAGATATTAATCAGCTCTTGGCGTATCATGAAGTCTTTGGAAAGCTGCAGAGTGAGATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTACCTACACAAACAGTTACCACGATACAAAATGGCACACCAATCGTGCAGCAGGTTCAACTGAACAAATTTGACATAAAGTCAAGCGACGGCGAAGCGACGCCGGGCCCGAGCGCATCGCCCGTGTCGGTAGGCAGCCACGCTTGTGAGATATGTGGAAAGATCTTCCAATTTCGTTATCAGCTCATTGTACATCGCAGATATCATACTGAGAGAAAGCCATTCACATGTCAGGTATGCGGCAAAGCGTTCTCGAATGCGAACGATTTGACACGTCACGGCAAATGTCATCTGGGTGGATCCATGTTTACTTGTACCGTTTGCTTTCACGTCTTTGCGAATGCGCCCTCACTAGAACGTCACATGAAAAGACATGCTACCGACAAACCATACAATTGTACGGTTTGCGGTAAGAGTTTCGCGCGCAAAGAGCATTTGGATAACCACACAAGATGTCATACAGGCGAGACGCCGTATAGATGCCAATACTGTTCGAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACACACCGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGGAAAGAGCATCTCGCTAATCATATGCGCTCGCACACAAACGACACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCACATCGCTGTGACTTCTGTTCGAAGACATTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGAAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAACCATCTCCGTCAACATACTGGAGATTCCTCACACTGTTGCAACGTGTGCTCCAAACCATTTACAAGAAAGGAACATCTCGTCAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTCCCACTAAAGGGCAATCTTCTCTTTCATATGCGTTCGCACAACAAGGGCAGCAATGCCGAGAGACCATTTCGCTGCGATCTGTGCCCTAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCACCGGCGTTCGCATTCAGACGAGCGGCCGCACAGTTGTCCGGATTGTGGGAAAACCTTCGTTGAGAAGGGCAACATGCTGCGACATTTGCGCAAGCACGCAGCTGAAGGCCCACCGACACAAGTTAGCACACCATCGGCTATACCGCAATCCGGTGTACTACCAATACCGGCAGCGGCGGCAGTTCTAGTCGGGCATCCCTTAGCACCACCGGCACCGCCTGTGGTACCACAACACACGGTGGTTGTGCCGACACCGCCCGGTGTATTGACATCGTATTAA
Protein Sequence: MHCQRLRRHNKSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPASVSHLAAHAQMQQQMQAQAQQQLHQQQQQQPQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQTLMQQQQQQQQQQQQQQQQQQQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_01006477;
80% Identity: -