Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: -
Assembly: GCA_001594065.1
Location: NW:914984-937213[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.4 84 3.4 1.0 3 23 328 348 327 348 0.95

2 30 0.00043 0.026 14.4 1.7 1 23 360 382 360 382 0.98

3 30 0.0012 0.076 12.9 3.4 1 21 388 408 388 410 0.95

4 30 0.00093 0.058 13.3 3.6 1 23 417 439 417 439 0.98

5 30 0.00087 0.054 13.4 1.0 1 23 445 467 445 467 0.97

6 30 0.00019 0.012 15.5 5.4 1 23 478 500 478 500 0.97

7 30 7.7e-06 0.00048 19.9 0.8 1 23 509 531 509 531 0.99

8 30 4.3e-06 0.00026 20.7 0.9 1 23 537 559 537 559 0.98

9 30 0.0019 0.12 12.4 4.5 1 23 565 587 565 587 0.95

10 30 1.7e-06 0.0001 22.0 3.7 1 23 593 615 593 615 0.98

11 30 0.4 25 5.0 0.7 1 23 733 755 733 755 0.85

12 30 2.7e-05 0.0017 18.2 0.5 2 23 764 786 763 786 0.95

13 30 3.4e-05 0.0021 17.9 4.2 1 23 792 814 792 814 0.98

14 30 0.1 6.3 6.9 0.4 1 23 818 840 818 840 0.97

15 30 2.4e-05 0.0015 18.3 0.8 2 23 847 868 846 868 0.97

16 30 1.9e-05 0.0012 18.7 0.1 1 23 874 896 874 896 0.98

17 30 0.083 5.1 7.2 0.7 1 23 902 924 902 924 0.97

18 30 1.3e-06 8e-05 22.3 0.2 2 23 931 952 930 952 0.97

19 30 1.2e-06 7.4e-05 22.4 0.6 1 23 958 980 958 980 0.98

20 30 4e-07 2.5e-05 23.9 1.5 1 23 986 1008 986 1008 0.99

21 30 0.0039 0.24 11.4 0.4 1 23 1132 1154 1132 1154 0.93

22 30 4.6e-07 2.9e-05 23.7 2.1 1 23 1160 1182 1160 1182 0.99

23 30 4.7e-06 0.00029 20.5 0.5 1 23 1188 1210 1188 1210 0.98

24 30 0.0011 0.065 13.1 2.4 3 23 1218 1239 1216 1239 0.95

25 30 6.4e-06 0.00039 20.1 3.2 1 23 1244 1266 1244 1266 0.97

26 30 1.6e-05 0.00096 18.9 1.8 1 23 1275 1297 1275 1297 0.98

27 30 4.6e-06 0.00028 20.6 1.0 1 23 1303 1325 1303 1325 0.97

28 30 8.1e-05 0.005 16.6 1.3 2 23 1332 1353 1331 1353 0.97

29 30 5.5e-06 0.00034 20.3 3.3 1 23 1359 1381 1359 1381 0.98

30 30 5.8e-06 0.00036 20.3 0.8 1 23 1387 1409 1387 1409 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.4	84	3.4	1.0	3	23	328	348	327	348	0.95
2	30	0.00043	0.026	14.4	1.7	1	23	360	382	360	382	0.98
3	30	0.0012	0.076	12.9	3.4	1	21	388	408	388	410	0.95
4	30	0.00093	0.058	13.3	3.6	1	23	417	439	417	439	0.98
5	30	0.00087	0.054	13.4	1.0	1	23	445	467	445	467	0.97
6	30	0.00019	0.012	15.5	5.4	1	23	478	500	478	500	0.97
7	30	7.7e-06	0.00048	19.9	0.8	1	23	509	531	509	531	0.99
8	30	4.3e-06	0.00026	20.7	0.9	1	23	537	559	537	559	0.98
9	30	0.0019	0.12	12.4	4.5	1	23	565	587	565	587	0.95
10	30	1.7e-06	0.0001	22.0	3.7	1	23	593	615	593	615	0.98
11	30	0.4	25	5.0	0.7	1	23	733	755	733	755	0.85
12	30	2.7e-05	0.0017	18.2	0.5	2	23	764	786	763	786	0.95
13	30	3.4e-05	0.0021	17.9	4.2	1	23	792	814	792	814	0.98
14	30	0.1	6.3	6.9	0.4	1	23	818	840	818	840	0.97
15	30	2.4e-05	0.0015	18.3	0.8	2	23	847	868	846	868	0.97
16	30	1.9e-05	0.0012	18.7	0.1	1	23	874	896	874	896	0.98
17	30	0.083	5.1	7.2	0.7	1	23	902	924	902	924	0.97
18	30	1.3e-06	8e-05	22.3	0.2	2	23	931	952	930	952	0.97
19	30	1.2e-06	7.4e-05	22.4	0.6	1	23	958	980	958	980	0.98
20	30	4e-07	2.5e-05	23.9	1.5	1	23	986	1008	986	1008	0.99
21	30	0.0039	0.24	11.4	0.4	1	23	1132	1154	1132	1154	0.93
22	30	4.6e-07	2.9e-05	23.7	2.1	1	23	1160	1182	1160	1182	0.99
23	30	4.7e-06	0.00029	20.5	0.5	1	23	1188	1210	1188	1210	0.98
24	30	0.0011	0.065	13.1	2.4	3	23	1218	1239	1216	1239	0.95
25	30	6.4e-06	0.00039	20.1	3.2	1	23	1244	1266	1244	1266	0.97
26	30	1.6e-05	0.00096	18.9	1.8	1	23	1275	1297	1275	1297	0.98
27	30	4.6e-06	0.00028	20.6	1.0	1	23	1303	1325	1303	1325	0.97
28	30	8.1e-05	0.005	16.6	1.3	2	23	1332	1353	1331	1353	0.97
29	30	5.5e-06	0.00034	20.3	3.3	1	23	1359	1381	1359	1381	0.98
30	30	5.8e-06	0.00036	20.3	0.8	1	23	1387	1409	1387	1409	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGACTATTTGGATCTGTGCCGGTTGTGTCTCGTGAAGGACCGCGTCTCCGTGCCGATTTTCGAAGGCGAGGGTGACGTGCGGCAGATATTCCTCAAGATCACCGCCTGTTTGCCGGTCAAGgTGAACAGGGAAGACAAATTACCTAAAAAGATATGCGATGATTGCGTGTATAAAGTAGAATTATGTTATCAATTTTGGCATACGACTGCAAATGCCGAGAAACAATTGCTCCAATGGCTAGGCGATGTGAACATGGAAGATAAACAGGGTTATAATGTTCTCAATCCGaacgAAATAAAACCAGATCAGAGCAATGAGAACAGGTTAGATGGTACTGTGATGCAACAAGTAAGCGAACATCAGAACAATATGAATATGAGTATGATGGACAACATGAGCCTCAGTATGCCCATGATAATGTCGAGTAATACCCAACAACAAATAACTTCAGTTCCTATGGATAACACTGGTAGCTCTGTTCAACCAGTAGCTGGACCAAGCACACAAGCAACACATGACCAAATCACACAGACCCAAACGGATGCGTCTACGCAacatgaagaagaagaagagagcaGTGACGAAGAAGAAAACTCAGACGATGAATGTGATGGAGACGAAGGCCTACctataaaagaagaaagtgaAGACGATCCTAATAATAGAACTATAGAGCCTACAACATTTGTCAATGTTTCCTTACCATGTGACGAAGCAGGACCTTCAGGACTTCAACAACAGAAAATTACAGACATGCCAGAGATAGTAATACCGCAAACAACAGATGTGGATCCAAAAACTGGATATTTTGTGTCAAAACTCACGGTGCTGCCTCGGGATCGGCAGCAGTTTGGGCCCGGCGTAATCAGGAAGGTCTTCATCAGGCGAAAGCACGTGCAGTTACTAGCGGACCCCATGCAATCGAAGAAGATGAAGAAGACGACGCTCGCCTACAAGAGTGCCTTGCTATGTAATATTTGTGGCGGCAATTTCATCTGTGAACAAGCTTTTAATTCGCATTTAAAGATGCACGAAGAACAAGTGCAGCCGCAGCAGGACGAGCAATTTGTTTGCGAGACTTGCGGTTGTAGCTTCATAACGATATCGAAGCTGTATGATCATCAGAAAGAACACATTACCGAAAACTGTTTTAGCTGTGACAACTGTGACTACGTGACTTCCCACAAAGAGAACTTAATCGCCCATCAAAAGTGTCACGATGTATCTAATTACAAGTATCAGTGCGAGGAATGCGGCGAACATTTCCAGAGCAAGAGCAACTGTCAGGTACATCTGCTGTCGCATGGAAATGAAAAGTCGTTTCAGTGCGACGTGTGTAATGCCACATTTCGCTACCGCCAAGGTCTACGGTTACACTCGAAGTTACATCAACCGGGCTACGTACAGCCTCAAAGGAAACACCATTGCGAGCTATGCAACAAGCGTTTCTCTCGTAAACAAGTGTTGCTAGTGCATATGAAGACCCACGACAACGTAGGACCACAAAACGAGTACGTATGCACGATATGCAGCAAGTCCGTATCCAGCAAGACTTATCTCGCGGTGCATCAGCGCAAGCACACCGGCGAGAAGCCTCATGTTTGCGACGTTTGTGGCAAAGGCTTTATCTCGCAGAATTACCTGAGCGTGCATCGTCGCACGCATACAGGTGAAAAACCGCATCAATGCATTCATTGTAACAAAAGATTTACTCAACGGACTACGTTGGTAGTACATCTACGAGGTCACACAGGTGATCGGCCTTATCCTTGCACATACTGTCATAAATCATTTGCTTCAAAAACGATGCTGAACTCGCACTTAAAAACGCACGCGAAACAAAACGCTCGACAGCAACAAgaacagcagcaacagcagcaagAAAGTTCGCAACAGGAAGAAGAAACATTGCCGTTTGAAACAGTCACTATAGTGTTgtGCGACGAGATTGACATAGAGGATATAAAGCTGGACCCAATTGACGAATTGCGAGGTATAGAGTTAGTACGGTATCAAGACGAAGTACCTATAGTGGCAGAGTATCATCACATTGATCAAGAAATAGTTATGGAAACGATTGAATATAAGTCTGAAGATTCGGACGACAAATCAGAACCTGCGTCGGAAATACGTATTCTAAAACAGGTTTCCGAACACAATTCGAATCGCAAGCGTGCGATAGTTTACGAATGTGAAATTTGCGGGAAGCAAATACTCAAGAAGCTACAATTTTTGAAGCACAGACAAGACCACGAGAGGAATCCAAAGACTGAAGATCGTTGCGAGGAGTGCGATAAGATCTTCGATAATCAGGAGAAGCTGCAAAAACATAAGATAAGAGCACATCAAAAGGAGAAACCTTTTCAATGTGTTATGTGCGGTAAGTGTTTTAAGACCGAGGAGTTCTTGAAGACTCATCTGAAGCAGCATAACAAACGTTTCACCTGTGACATATGCGGTGTATCAAAAGTTTCCGGATATGATTTGCGTTTGCACAAAAAGAAGCACAATCAggaatatgtaatttattgtgaGACTTGCAACAAAGGCTTCTACACGAATCAAACGCTGGAGCGGCACTTGCTCACTCACACCGGCGAGAAGCCATTTGTGTGTAAAGTATGTAACACCCCGTATGCGAGTGCAGCATATCTCAACATGCATATGAGATCCcacggcgaaagagagaagcACAAGTGCAATATCTGCGACTTCGAGAGTTACTGGAAGGCCGCATTAAAAGTACATCTTAAGATACATACTGGCGAGAATCAAATCACATGTGAAGTGTGCGGGAAATCTGTCAGCAGCAAAACGTACCTACAAATTCACATGCGTATACATTCAGGTGAAAAGCCACACGTTTGCGAGGTATGTGGCAAGGCGTTTAGCGTACGAAAATACCTAATCGTGCATTTAAGAACGCATACCGGCGAGAAACCTTACGAATGTAAGGTGTGTCAAAAGAGATTTACGCAACAAGGCTCACTAAACTCTCATATAAAGTCTCATAATGAAATGGATGATTCTAATGAACTTATTTTTGTTTGGATAAATTCGTCCAGAATGAATTCATccaaaatattagaaatagatGGTTGTAGTAAATATTCTGACGAAACAAATGAAAAACCAGCACAGACGTGTGTAAAAAATGAACTGTCTATAGATGAATGTACGGATTCTACATTGGTTTCAATTTTCGTTAAAGAAGAAACAATTGTTAAGCAAGAAGATTGCAGTGTTCATTACAAAGATGTAAGTGTGAGGCATGAGTCTTCCAACAACCCACTGACgcaaaaatctgaaaaacCTACAAACGGAGGAATTACTCATCAAAATTACTCAGGCATGAAAAAACAATTCACCAGACAAATGTTTTATGAGTGTAGCATATGTACGAAGCTTTTTAGATCAAAGAACTTGTTTGAAGGTCATTTAGTGGCACATAGCGACGCTCGACCCTATCAATGCGACGTCTGTGGCAAGTGTTTCAAGAGGACCAATACTTTAGCAGTACACCAACGAATCCACACTCACGAGAAAAACTTTGTGTGCGATGTGTGTGGTCACGCGTTTGTGCAAGCCTCTCAATTAGCCACTCATTACAAGCGTCACTTTGAGAAGTACACGACACACTGTGAGATTTGCAACAAGGGCTTCTTCACGAACGCCGAGCTCCACGGGCACATGAATGTGAAGCACGGCGCCAAGGAACACGTATGTACTGTTTGCAACAAGTCTTTCCCCAATAATCATACCTTGGTGCGCCACTTGAAAATTCACGATCCGAACTTCAAACCAGTAAAGCACCAATGTGAGTTCTGCGGCAAGACATTCGCCTACAAGAACTCGTTGGTAGTCCACGTCAAGTCGCACACTGGCGAGAACAAATATGACTGTCATTTATGTGGTAAATCCGTTTCATCTAAGGGATCCCTTCAGGACCATTTGCGTCTTCATGGCGGGGAGAAGTCCCTGGTCTGTGATGTTTGCGGCAAGGCTTTTCACAAGAGAACGACATTAGTCGTGCATAAAAGAACCCATACCGGCGAGAAACCGTACTCGTGCGACACTTGCGGAAAGTCTTTTACGCAACATTCGACTCTCGTTATACATAAGCGATATCATACTGGTGAGAGACCATATCAGTGCAGTTATTGCAGCAAGTCATTTGTGTCTAGAGGATTGCTTAATGctcataataaaatacactttgttaatgaaataatgatgtaA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKITACLPVKVNREDKLPKKICDDCVYKVELCYQFWHTTANAEKQLLQWLGDVNMEDKQGYNVLNPNEIKPDQSNENRLDGTVMQQVSEHQNNMNMSMMDNMSLSMPMIMSSNTQQQITSVPMDNTGSSVQPVAGPSTQATHDQITQTQTDASTQHEEEEESSDEEENSDDECDGDEGLPIKEESEDDPNNRTIEPTTFVNVSLPCDEAGPSGLQQQKITDMPEIVIPQTTDVDPKTGYFVSKLTVLPRDRQQFGPGVIRKVFIRRKHVQLLADPMQSKKMKKTTLAYKSALLCNICGGNFICEQAFNSHLKMHEEQVQPQQDEQFVCETCGCSFITISKLYDHQKEHITENCFSCDNCDYVTSHKENLIAHQKCHDVSNYKYQCEECGEHFQSKSNCQVHLLSHGNEKSFQCDVCNATFRYRQGLRLHSKLHQPGYVQPQRKHHCELCNKRFSRKQVLLVHMKTHDNVGPQNEYVCTICSKSVSSKTYLAVHQRKHTGEKPHVCDVCGKGFISQNYLSVHRRTHTGEKPHQCIHCNKRFTQRTTLVVHLRGHTGDRPYPCTYCHKSFASKTMLNSHLKTHAKQNARQQQEQQQQQQESSQQEEETLPFETVTIVLCDEIDIEDIKLDPIDELRGIELVRYQDEVPIVAEYHHIDQEIVMETIEYKSEDSDDKSEPASEIRILKQVSEHNSNRKRAIVYECEICGKQILKKLQFLKHRQDHERNPKTEDRCEECDKIFDNQEKLQKHKIRAHQKEKPFQCVMCGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIYCETCNKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGEKPYECKVCQKRFTQQGSLNSHIKSHNEMDDSNELIFVWINSSRMNSSKILEIDGCSKYSDETNEKPAQTCVKNELSIDECTDSTLVSIFVKEETIVKQEDCSVHYKDVSVRHESSNNPLTQKSEKPTNGGITHQNYSGMKKQFTRQMFYECSICTKLFRSKNLFEGHLVAHSDARPYQCDVCGKCFKRTNTLAVHQRIHTHEKNFVCDVCGHAFVQASQLATHYKRHFEKYTTHCEICNKGFFTNAELHGHMNVKHGAKEHVCTVCNKSFPNNHTLVRHLKIHDPNFKPVKHQCEFCGKTFAYKNSLVVHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGERPYQCSYCSKSFVSRGLLNAHNKIHFVNEIMM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -