Ccot000116.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- Mblk-1
- Assembly
- GCA_001594065.1
- Location
- NW:126475-178402[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-18 5.3e-15 54.3 0.1 1 45 556 601 556 601 0.96 2 2 8.9e-18 9.5e-15 53.4 0.0 1 43 980 1023 980 1025 0.94
Sequence Information
- Coding Sequence
- ATGGCGGATTGCCCCTATGCCCGCTGCATACAGGAACGCAGACACATCCGACGGGAGCTGCTGCGATGGACAAAGAATATGGTCTTCGTAGTCGGTCTGGAACGGGTAGCAGAGGAGTTGATGGGCCGTAGGAGATGGAAGCAATACCAGGACACCCTGTACAGCGGCACCCGCAGCAGCGAATCACAGCCCCACCATCGGCTTTACCCGGCGTTGTCGTCGTCCTGCAACCCGATACCCGGGAGCCTGGACCAGATTGGCTCGCAGCTGCATCACCCGGCACCCACGTCGTTGTCGTCGACGGTGctgacgacggcgacgaccacgacgacgacgacgacgacgacgcttGCGACCGGCGTGGTAAAACAGGAGAGTCTGCAGAGGCATCATCTGCAGAACCACCATCACCTACCCGCGCCAGTTCAGGACCATTcacagcagcaacagcaagaAGATTCGCGCCGTCTAAGGCCGGGCGAAGTCAAGATCGAAGCCGCCGACGAGGAGCTCGCAGACGGTGTCGCGCGGGAGGACACCTCGACGAGGACGACGGATACGGTaacgtcgacgacgacgacaacgacaacgacgacgacgacgacgacggaagTAGCGACAACAACGGCAACGACCATCGGCATTGCGGCGACCACGTCGACAACGACGACCGGCACGACGACGATAGCGACGAGACGGCGACGCGGACGCCGGCAAAACGACGGGGAAGACGTCGACGGAGAGGAGGACGGCGAAGAGAACGACGAGGAAACGGGACGGGGCCAGAACGAGGCGGAAAAACGGCTCAAGCTCGACGAGGACGCCGACAGGTCGACGGTCAGCCCTCTCAGAACGGAGAACGATCGTGCGACTCATCCGACTGCCAACGCTACCGATACGGAAGGGACCAAGgaaCGAAAGGAGGAAATCGCGTTGGAGCGGGCACCGGTAACACAGGGCTTACTGAGGGTAAAGAAAGAGGAGGAGCTACAGGAAGTACCGGGTTCTGGCGGTACCACGATACTGACGACGCCGGCGACGGATTCGGAAGGGACCAGGTCGGGGTTGTTATGCCGCGACGGGAACGCAGTAGCGACGAGCGTCGCGACACCGTTTCTCCTTGGGAGACGTACGAGCCCGCCGCCGGAAGACTGGAAGCCGCTCGACAAGTGTTACTTTTGCCTCGACGGCAAACTACCCCACGACGACCAGCCGCCCCTTAGTCCGCAGAGCGACAGTAGCAGCAGCTCGCGATCGGCGGAGTCACCGATGTCGGTCCAGGTGGACCCGATGGCGGCGTCCGTGGTCGCCGCCGCTCTCAGTGGCACTTACCCCACCTTGCTGCCCCAATGGTGCTTACCGCCGAGGGAGGCGCCCCTTGTTAGGGTGCAGACCCATCAGGACAGCGCCGCGGCGGCCGATCAACCGCTCGATCTTTCGGCCAAACCCAGAAATTCTCAGGACAACAACATATCTCTATTGGAGCAACAGAAAATACCTCTGAGAATGCCGACAGGCATCGATCCCAAGACTATCCTCAACTCGTGTTACCGCGCGAAACCGCGAATGACCGGACCGGTTGTGACcgcggcggcagcggcggcggcggcggctgcGGCAGGTGGTGTTCCAGTGGTGGGTGCCGGGGGCGGCAGGAGGACTTACACCGAGGAGGAGCTGCAGGCCGCCCTCAGGGACATCCAGAGCGGCAAGCTTGGCACGCGGAGGGCAGCGGTGATCTACGGGATACCGCGTAGCACTCTGCGCAACAAGGTCTACAAGCTCGCGATGGAACGCGAAAGGGACGCGTCCCTGACTAGCACCCATTCACACCCTCACGAGCCCGGCGCCCcagccaccaccaccaccaccatcaccaccaccaccaccaccaccactactactactactactactacaacACCACCAAATACGACCCAAAACGCCTCCGCGACCACTCCGCCCCCGCAAGTGGACGAGgcGGATGACAAAGAATTATCCGGTGCGGAAGAGGAGAAGGAAGTCGAGAAGGCCCTGTTGAAGCCTTTGCTGTCATTGGAGGATCTCGTAAGGTTTTCTACACTCGAAGGGACTGGTGGTGATTCCCTCAGAAACTTGTTGCAACGAGGACATGAGACAGGAGCTGAATGGCCCGGATTGGAACACGCGAACATCGGTCCTTATATTCAGAAGATGTTGGCTGCCGCTGCACCATTagGCATGGATACGCGGGACTATCGCATCCCCGAAGTGATGAGGAAGCTGATGAGCGAGGACAAGAGGCTGAACAAGAATGTGAACGGTGACCAGTCACAGCCGCATCACCATCAGCACCATCCCCTCGCCGCGCATCAACAGTCGCAGCAGCGCGGGCCCATGACGAACGATGACTTCAATCCCAACATCGAGGAAGAAGCCAGTGACAGCGCTCAGGGCAGAGCGATTTTGAAAATTCCGTCCTACAAGCCCGCCAGCACGCCGGGCTGTTCTAGCAAGAACGGCGAGCCGACTTCCGCCGCATTCGCTCAGAGCTTTGCGGCTGCCGCCTCGAGTCCGGGTCTCCTGGAACGAGCTAGTCCAGCGTTTTCCAGCACTAACAGCCCCACGAATTCGCTGGTAGGCAAAGCGGTGGCTGTTAATTTCCGCGACGTCATCGCCAAGAGCATCAGCGTCAAGTTCCAAGAGGGTCAAACGCCCAGTGCGACTGGCATACCGGGTTGCCAACCAGCCGGTGTGGTTCCATCACAGCAGGCTATGATAACAGACCCGAGTCCGTTCAAGAGGGGCCGATACACACCTCCACAGCCACCACAACAGCAACAGCAATCGCCAGCGCAACAACCGCAATCCAAGCAGCAGTCGCAGGAGGCGAACAAATCGAAACCGGGTACTGGTGGCAAAGGTACCAGACCTAAACGCGGAAAATACAGAAACTACGACAGGGATAGCCTCGTCGAAGCGGTACGCGCAGTTCAACGCGGTGAGATGAGCGTGCATCGCGCTGGCAGCTTTTACGGAGTTCCGCACTCCACCCTTGAGTACAAAGTCAAGGAGCGGCATCTCATGAGGCCGCGCAAAAGGGACCAGAAGCAACCGGACGACAAGTCGAAGGAGACTGCGACGACGGCAGCGGCGGCAGCCGCGGCCGCGGCGATGCGGCCGGGCACTACTGGCGTCGACAAGAAGCCGCAGCTGAAGCCGCAGAAACCGTTCACACCGCCCGGTGGTATACCCGGTCCGAATGGTTTGAAAATGCCTCCGTTCATGGAGGGCATGCCCCACCTGCCATTCGGACCCTTTAACTTCTGGAACCCGACGCCGTTCATGCCCTCCCCCTTTATGGGTGGCGCGCCGAACGTGCCGATCCTTCCGGAACAATATTTCGCATCGCAGAGAATGCGCGGGCTACAGGAGCAACAACGAAACGCCACGATGGTACAGCAGCAACATCAACAACGAGACCGAGATGGTGTTGGCGTATCCGGAACGACAGACGCGGCCGGAACTTCGAATTCTCGAAGCGCTTCGATGGCGAAAACGCCGCGCGATATGGTGGAAAGCATTTACGATGGGCCTGGGGCGAACGGTAGTTTCTTGGACAATCTGATCAGGTCGAGCCTTGAGACAGGCGTTCCAAGGGACCAGCGGGCGATAGCGGAGGCGAGAAACCAGCAGCAGCAGTCGTCGTCGCAACATCCGGAGACGATGAGTAGCAAGACACTGATTGATCAGCTCTGCAGAAACTCGAGGAGGACCCCGTTGCCGCGGATGGCGCAAGACAGTAGCGAGGACGAGAGTTATCGAGGACCAACGGGCAGGATGGTGCCAGAGAGACCGGAGCGCGTGCCCACGGTCGACCTCAGCCCCTCACCATCGGAGAGAGGTCGCACGGAGGACGGCAGCGATCGGCTGACGTCACCGCCGACACCTCTGTCGATTTCCCGAGCGGGTAGCAGGGACGAGGACAGCACCCGTGACTCGAGGATCGATCGCAGCAGCAGAGAGCGCGAGGTTCACAACGGCGGCCAAGAGGATCGCGACCGGAAACAGCCTCTGAACctgcaacagcagcagcagcaaccaCAGCTGAATCACTACCCGGACTTACACAACCTCTACGCCGCGTCAACTGACAAAAAAAGTGCCTGTGATAGTAAGCTTATAGTAGATCATTCGAGCCAGAAGACTCAGCCGCAGCAACAACAAAAGGAATACGCTGCCGTGAGCGGGCTGGTCGTGCAATTGCAGAGGGGCTACAACACCGCGAGCAGCAGATCCGGCGAGCCGACTAACAGCCAGCAGCCGGCGGCGACGGAACAGCGCGCCACCGCGCTCAGCATGGAGGACTCCGTAGAGTAG
- Protein Sequence
- MADCPYARCIQERRHIRRELLRWTKNMVFVVGLERVAEELMGRRRWKQYQDTLYSGTRSSESQPHHRLYPALSSSCNPIPGSLDQIGSQLHHPAPTSLSSTVLTTATTTTTTTTTTLATGVVKQESLQRHHLQNHHHLPAPVQDHSQQQQQEDSRRLRPGEVKIEAADEELADGVAREDTSTRTTDTVTSTTTTTTTTTTTTTEVATTTATTIGIAATTSTTTTGTTTIATRRRRGRRQNDGEDVDGEEDGEENDEETGRGQNEAEKRLKLDEDADRSTVSPLRTENDRATHPTANATDTEGTKERKEEIALERAPVTQGLLRVKKEEELQEVPGSGGTTILTTPATDSEGTRSGLLCRDGNAVATSVATPFLLGRRTSPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALSGTYPTLLPQWCLPPREAPLVRVQTHQDSAAAADQPLDLSAKPRNSQDNNISLLEQQKIPLRMPTGIDPKTILNSCYRAKPRMTGPVVTAAAAAAAAAAAGGVPVVGAGGGRRTYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERERDASLTSTHSHPHEPGAPATTTTTITTTTTTTTTTTTTTTTPPNTTQNASATTPPPQVDEADDKELSGAEEEKEVEKALLKPLLSLEDLVRFSTLEGTGGDSLRNLLQRGHETGAEWPGLEHANIGPYIQKMLAAAAPLGMDTRDYRIPEVMRKLMSEDKRLNKNVNGDQSQPHHHQHHPLAAHQQSQQRGPMTNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFAQSFAAAASSPGLLERASPAFSSTNSPTNSLVGKAVAVNFRDVIAKSISVKFQEGQTPSATGIPGCQPAGVVPSQQAMITDPSPFKRGRYTPPQPPQQQQQSPAQQPQSKQQSQEANKSKPGTGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSFYGVPHSTLEYKVKERHLMRPRKRDQKQPDDKSKETATTAAAAAAAAAMRPGTTGVDKKPQLKPQKPFTPPGGIPGPNGLKMPPFMEGMPHLPFGPFNFWNPTPFMPSPFMGGAPNVPILPEQYFASQRMRGLQEQQRNATMVQQQHQQRDRDGVGVSGTTDAAGTSNSRSASMAKTPRDMVESIYDGPGANGSFLDNLIRSSLETGVPRDQRAIAEARNQQQQSSSQHPETMSSKTLIDQLCRNSRRTPLPRMAQDSSEDESYRGPTGRMVPERPERVPTVDLSPSPSERGRTEDGSDRLTSPPTPLSISRAGSRDEDSTRDSRIDRSSREREVHNGGQEDRDRKQPLNLQQQQQQPQLNHYPDLHNLYAASTDKKSACDSKLIVDHSSQKTQPQQQQKEYAAVSGLVVQLQRGYNTASSRSGEPTNSQQPAATEQRATALSMEDSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254708;
- 90% Identity
- iTF_00016606;
- 80% Identity
- -