Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: JARID2
Assembly: GCA_001594065.1
Location: NW:50166-64547[+]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.4 4.8e+03 -2.6 0.2 56 82 150 178 127 180 0.56

2 3 1.4 2.7e+03 -1.8 0.0 38 65 1093 1119 1086 1130 0.81

3 3 7.8e-23 1.5e-19 69.5 0.0 7 89 1349 1429 1344 1429 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.4	4.8e+03	-2.6	0.2	56	82	150	178	127	180	0.56
2	3	1.4	2.7e+03	-1.8	0.0	38	65	1093	1119	1086	1130	0.81
3	3	7.8e-23	1.5e-19	69.5	0.0	7	89	1349	1429	1344	1429	0.93

Sequence Information

Coding Sequence: ATGGTTTTGAGTCGCAACGACAAacgaaaaaggaaagaaggaGATCTGGTAGATCTTATGGAACCACTTTCGGAATCTCCGAAAAGAACCAAAGTTCATGCACAAAGAAAATTTGCGCAAGGTGCGATCGCAGTATTTAATACATCACCTACACCTATTAAAGACAAAGAGAAAGCTAAACCTGGTACAATCACAGAATTAATAACTCACAAACGACCAAACACTGaggattttttaacatttttatgctTCAGAGgAACATCTATTTTGCCacctaatttaaattttttcaatactgGCAACAAAAAGGAGAAACAAGGATCTAAACCAACTCAAACTTCTATAGAAAAAACATTGTCCTCTACTAGTACTTTCACAGAGATTCAGAAGCAAGAAAACACATGCCAAAAAAATGTGACAAAAGTAAAACCTATTGTttcgaataaaaagaaagtgaCAAGTGCATTACACAAAAGTATTACTAAACTTAAGACGACTACATCTACGGTTCaagcacttaaaaaaaaatatcaagaacaACGCCTTGCTAAGCAaagaatcaaaaataaatttaaaactacttGCGTTATGAAGACAAGATCATGTACGGAGAGATCTATGTTAAAGGCTGGACTTCAGTTGACACCGCGAAAATTTTTACCTAAAATCAAGACAAAGAGGCATGGCTTAAGAAGTAGTGTACTACCAGAGAAAACTAGTAAATCTCTATCAAAAACGAAAGTTACGTTACCAAAACCAAAGAAGAAAGTCAatctaaaattgaaaaatagtgATACTTCAAATATAGATATGTCATCCGAAGAAGACAATGATGTCGACAACGAAGAAAGGGAAGAATTACATATAGAGAAAGCAACATCACAAATAAAGCGAAACATACAAAGAGGCATccaaaaaaagatttgtaCTAGAAGTAAGTCAGAAATGAGGAGAGTTACTCGATCGTCTAGTGGCACAGTCTCTTCACAAAATCTTTCTAGGAGGCCTACcagaaaaacaaaagaagCAGCTGCTGTGTATATGGAAATTCTTGGGAGAAAACTAGTGAGCCCGGATTTAGAAAATGATAACGTTTCAGTTGAGAGCTTTCCCGAGCTGCCAAATGCTCGTAGAATAACGCAAACGGAGAACGAGCTTAAAGCCAAAGTGAAACAAAGTAGTATCAAGGCTATTGTTAAAACCAAGGATTCTAAAGTTAGTTCCTACAATAGTAACACTAATAAGCGATTGgataaaagcaaaaataataaactgattTTAAAGAGCAAACGTCTGCTGAGGGTACAAAGATATTGTGAAGAGGATAGCGACGAAGAATCTGAGAGCTCGATAGAAACAAACAATTCAAGACCTATTACCAGACAGAGTCTTGGGAAAATTGATAAACCAATCAGAAGCCTTAGATCATCCTCCAAAAATGCAACTATACAAACAGAAATACAAAGtaacgtaaataataaaccGAAAACTCAAATTCAAAATTGCGTGAAATCAgttagagaaaaatttgtgttaaaacaCAAAcgcgagaaaaatatatgtaaaacgtcgttaaataagattaaacaAAAGAACCTTAAAAGTAATCAAAATGAGAAGGGGGAATCAGAAGAGGAGACGTTAGGAATGCTactcaataaaataaagaagaaaaaagataacgaggaagaagaggaaggGCAGATCCCTGACAATATTAACAATCTGAAAGATAAAAAGGCAGCTTGCAGTAACATACAAAAAACAACTGATCTGTCGAAGGTATCAGACGACGAGGAATCTTTTCGAGGGTTTACTAAGAAGGCAATATCAAAAGTTTTGAATTCATGTCAGACGCATgctaatgttaatttattagtcACAGAGTCTGACAAAAAGTTGAATTTACCCAAAACATTGGATGTATCGCAAACAGCGAATCAAAGCGTCATTTTACAGAAAAGTAAAGTAGAAACATCATCAATCAAAGACGGTTTTTCCGTTGCGAATCCGTTAAATGGTGAATGCAATGTATTTGTGCAGGAAAAATCTATATTAGATTTGTCCGACAAGACTCAAAGCTTATTGTTGCCATTTACAGAACAGACGAGCAAAAAATGTAATCGCGAAAATGAGGTTTCTTCCAATCTTATACCACTATCTACTCTGCACACAAGAAAAGAACGAGTAAATATGTCAACCGAACAAATAGAAAAGTGGTTGAATGAAAGTTCATTTGCCAAAGAAGAGAGCAAGCTGGAGATGGAAAACGTTTCTAGTTTTAGGTACGATTCTGCAGAAAAGTTAAAGACGGATGTCTCGCATCTATCTATTTCAACGAAAATCCAACATTTGGTACGCCCGGTCAACGTTACACTTTCAAAATTATCAGATAAGACAAATTTGAAGGATCGTATAGGAGTCcacaataaaaatgtgatacCAGTAATATCCGATATGCGTAATACCGGAGTGAAGCGACAAAATGCAGTTGTTGACAAAAATAAGAGCACTATCAAAGGAAAACAGACTGTCAAGAATAAAACTGGAAAAACGAACAAAGATACCTCTTTTTCTGAAGATACAAGCAACAATACTGTCTTTAAAACAGATCAAAACTCGGTGGATGATTCTGTAGAGAAGAAATCATCGACAGAGAAGAAAACGTTTCAGCCGCGAAAACCTTTTTTGCCCAAAGTCAAGGAACGGAAAACTGTAATACCGAATGCGAACGCGTTTTCGCCAGAGAACGAGAGCAGTGTTTACGCATTTGAAAGTGATGCCGAAGTTCCCGTTAGCACACCTTTCCgaagaaaaatcaaagataATGCAAGACGTTCGACAGCAGCAACCTCTACGGAGACCATAATATCCGAGTCCAAAATAATCCCTAACAAATTAAGTTCAAAGGATTCTGAACCATTGGatagtaaagaaaaatcattaaaCGATCCCGTAACGATTGCAAAGAAAGAACAAGAGTCGCAAAGATCAAAGAACGTAGTAAATATAACTCCAAGCGTGAGCAAGTTTGAATTACCCAATAATTTTGCAAGCTTGACCACTGTCCAAGTGCTGCCACTTGATAAACTCACGACAAGTTGGAGCAACTTAAATTGTAGTGCTTCCATAGCGGTACAAGTGAATCTCGACGAGACCACGCGAGAACACGAAAACAATATAAGTCAACAGAAAAGTACCGAGATATCTACTCAAACCGAAATGAATAACGAGaatgacgacgacaacgatggacatctattttatattccgTTACAGGCTGTTACAAGAGGCGGTCCAAATCTGGTACAAGGACAACAGCTAATACAGGGCGTGGCTGTTAAACTCGGTACTGAAGGACCGACTGGTCCTAATCAAAGAGTACTCCTTCGAGCTAAATTGGTCACTAAGCCACCGTTATCAGTGGCACGTTGTCCACCAATAGGTACAGTACAGCCGACAACGCGTACTCCATCTAATCCTGCAGTAATTACAGTGGAACAACAAGTTCCATCAACATCATCGACCGCAACTGTGTCAACCGCAATAGCAAGTATGTCGAACGTGGAGATGCAATCAACatcattaatgaaaaatgaaatgtcAATGCCAAGTTTGAATCGTCAAAATGTCAGTACGATTATAAATAGCAATTCAGAAAAACTCACAAAATCACCAAAGTctagagaaagaaaaacttCTATAGATTCGACAAAAAGCGGGAAGAGGATACAAATGAAATGCAAACAAAAGGAACTAGGCTCTTCAAGCAGTAGTACGACGTTTCTAGGCACGAAAATCGCGAATGATGAAGCTCGCGTAGTCGAGGCGCCAACATTTCATCCAACGGAGAAAGATTTCCAGGATCCATTAGAGTATATAGATAAGATAAGGCCAGTCGCTGAAAAATTTGGAATTTGTAAAGTGGTACCTCCACCGAATTTCAAGccAGAATGCAAGGTGTCTGATGATATGAGATTTACCGCTTATAATCAATATGTACATCGCATGCTACACAGATGGGGTCctaatgtaaaagaaattatggctatcaagaaatatttagCTACTCAGAGTATTACTTTGACTCAACCTCCATGGATTGGTGGAATGGAGGTAGATTTACCTCATTTATATCAAACAGTTCAAAGTTTGGGTGGATTGAAAGAagtaattgagaaaaaaaagtgGCAAAAAGTAGCAGATGGCATGAAAATACCGAAATCAGCACAGGATCGTGTTACTAAATTAgatgatatttattgtaaatatttattgccaTATGATACATTATCCCcagaggAACGTGGAAAATTGTTTGATGAGGTTGAAAGTGaatggataaaaaaagaaagcaaagCCTTGCAAAGGCAAGAAGTATCATCTAATGATAACGATGAGGAAGAGGATGAAGACAGTTCTGATGAAATTGAAGAATGCATCGTTAAAGGAAGAAACATGCCATTGAATGCTTTTTATCGAATTGCCCGTAATACTCAACGTATGTGGTTCGGTGAAAATCAACGAGGAAATGAAACCGAGGGTGCTTCCGCCAACGAGGTAGAGAATGCATTTTGGAAACATGTTGCCGAGAGAAAACGTCATGTCTGCGTACATGCGGCAAGCATTGATTCAAGCGGTCGTGGATTTGGATTTTCTGTTGCAAAAAACAGTCCGTTTGCAAGACATCCTTGGAATCTTAAAGTGTTCACTAACAATCCTGGATCAGTATTAAGAGCTTTGGGTCCATTAATGgGTGTGACCGTACCAACATTGCATGTGGGTATGTTATTCAGCGCTTGTTGTTGGTACCGTGATCCGCATGGTCTACCATGGATAGAGTATCTACACACAGGCgccaaaaaaatttggtaTGGGATACCTGATgagcataataataatttccgaAAAGCGCTCTCGAAAATGGTACcacaatattgcaaaaataagaCGATATGGTTACCTTCTGATACTGCTATGGTTCCACCGGAATTATTAGTGAGCAATAATGTACCATTATGTCAGACTGTACAAGAACCAGgacaatttataatagtatttcCAAAAGCGTTCACATCAAGCATATGTACCGGTTATGTTGTATCTGAAAGCGTATATTTCGCACAACCATCCTGGTTAGAAACTGCAGAACAAGTATTTAAggatATACAAGATAGTTGCGaaccttctattttttcatttgaaagattgttatttaatattattaatgatacgAGATCGCACATAGATATATTGAAACAGatATTACCGAGTGTAATAAAGATTTGTGAAAAAGAATTAGATTATCGTAAACAGCTGGAAAATGTAGGTCTTATCAATAGAGAAAGATTGCCTTTACCAGTTAATGGAAAAGGGAAGAAAGGGAAAAAAGTGAAAGAGGATGATGGTGACTTTGAATGTGAGACATGTAGAGCCAATTTGTTTGTCTCTTTGGTAAATAATTCTCGAGATGACAGCGTTTATTGTTTGCCGCATGCCTTGcacttaattaattgtaagaagCAGGTTTTGAAACATTGTACTCTCATGTACACGTATGATGAAgATGAATTAGACGAATTGATTCACAAACTGGAAAACAGAATTGAAGCCAAATCTAAAAAAactaatcaaataaaacaaaataaacaagaaaaataa
Protein Sequence: MVLSRNDKRKRKEGDLVDLMEPLSESPKRTKVHAQRKFAQGAIAVFNTSPTPIKDKEKAKPGTITELITHKRPNTEDFLTFLCFRGTSILPPNLNFFNTGNKKEKQGSKPTQTSIEKTLSSTSTFTEIQKQENTCQKNVTKVKPIVSNKKKVTSALHKSITKLKTTTSTVQALKKKYQEQRLAKQRIKNKFKTTCVMKTRSCTERSMLKAGLQLTPRKFLPKIKTKRHGLRSSVLPEKTSKSLSKTKVTLPKPKKKVNLKLKNSDTSNIDMSSEEDNDVDNEEREELHIEKATSQIKRNIQRGIQKKICTRSKSEMRRVTRSSSGTVSSQNLSRRPTRKTKEAAAVYMEILGRKLVSPDLENDNVSVESFPELPNARRITQTENELKAKVKQSSIKAIVKTKDSKVSSYNSNTNKRLDKSKNNKLILKSKRLLRVQRYCEEDSDEESESSIETNNSRPITRQSLGKIDKPIRSLRSSSKNATIQTEIQSNVNNKPKTQIQNCVKSVREKFVLKHKREKNICKTSLNKIKQKNLKSNQNEKGESEEETLGMLLNKIKKKKDNEEEEEGQIPDNINNLKDKKAACSNIQKTTDLSKVSDDEESFRGFTKKAISKVLNSCQTHANVNLLVTESDKKLNLPKTLDVSQTANQSVILQKSKVETSSIKDGFSVANPLNGECNVFVQEKSILDLSDKTQSLLLPFTEQTSKKCNRENEVSSNLIPLSTLHTRKERVNMSTEQIEKWLNESSFAKEESKLEMENVSSFRYDSAEKLKTDVSHLSISTKIQHLVRPVNVTLSKLSDKTNLKDRIGVHNKNVIPVISDMRNTGVKRQNAVVDKNKSTIKGKQTVKNKTGKTNKDTSFSEDTSNNTVFKTDQNSVDDSVEKKSSTEKKTFQPRKPFLPKVKERKTVIPNANAFSPENESSVYAFESDAEVPVSTPFRRKIKDNARRSTAATSTETIISESKIIPNKLSSKDSEPLDSKEKSLNDPVTIAKKEQESQRSKNVVNITPSVSKFELPNNFASLTTVQVLPLDKLTTSWSNLNCSASIAVQVNLDETTREHENNISQQKSTEISTQTEMNNENDDDNDGHLFYIPLQAVTRGGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPLSVARCPPIGTVQPTTRTPSNPAVITVEQQVPSTSSTATVSTAIASMSNVEMQSTSLMKNEMSMPSLNRQNVSTIINSNSEKLTKSPKSRERKTSIDSTKSGKRIQMKCKQKELGSSSSSTTFLGTKIANDEARVVEAPTFHPTEKDFQDPLEYIDKIRPVAEKFGICKVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEIMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDEVESEWIKKESKALQRQEVSSNDNDEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNETEGASANEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVFTNNPGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFRKALSKMVPQYCKNKTIWLPSDTAMVPPELLVSNNVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDTRSHIDILKQILPSVIKICEKELDYRKQLENVGLINRERLPLPVNGKGKKGKKVKEDDGDFECETCRANLFVSLVNNSRDDSVYCLPHALHLINCKKQVLKHCTLMYTYDEDELDELIHKLENRIEAKSKKTNQIKQNKQEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423428;
90% Identity: -
80% Identity: -