Cimp070556.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- stc
- Assembly
- GCA_030704885.1
- Location
- JARQZK010005061.1:604769-623494[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 6.5e+04 -3.7 3.0 6 10 284 288 280 288 0.61 2 14 0.14 6.2e+03 -0.5 0.2 4 10 314 320 313 320 0.95 3 14 7.7e-06 0.33 13.2 12.3 3 19 328 344 327 344 0.93 4 14 4.6e-10 2e-05 26.7 12.4 1 18 380 397 380 398 0.97 5 14 5.9e-09 0.00026 23.1 16.2 1 19 438 456 438 456 0.98 6 14 6.3e-06 0.27 13.5 13.3 4 18 503 517 496 518 0.88 7 14 0.72 3.1e+04 -2.7 1.6 5 10 547 552 547 552 0.93 8 14 0.002 88 5.4 8.6 1 11 558 568 558 570 0.96 9 14 0.91 3.9e+04 -3.0 0.8 5 10 574 579 572 580 0.59 10 14 1.8e-08 0.00076 21.6 13.2 1 18 585 602 585 603 0.99 11 14 0.5 2.2e+04 -2.2 1.0 5 10 631 636 631 636 0.92 12 14 0.027 1.2e+03 1.9 9.5 1 17 642 657 642 657 0.92 13 14 1.4e-07 0.0061 18.7 17.3 1 19 695 714 695 717 0.97 14 14 0.0024 1e+02 5.2 15.5 1 18 724 742 724 743 0.89
Sequence Information
- Coding Sequence
- ATGTCTTCCTTTAATCAGCAACAGGCAAACCAGACTAGTTATCAGATGCAGGATTTGAATGGCGGGTCCTCTGAATTGAGGGAAACAGCTGGTATTCAGTCTACAAGCTCAGGTGAAAATCATCCAAGTGCTAAAGGTGCAATCAAGAAATCATCCAATTATTACAGTAGGAAGcctaaagaaaaatataaaaataattatagaaataaaaataatgaattgcaCTTCCAAGGAAACAACACTACTAGCGAATGGAGGCCATTTCAAGTTCAAAATCGTAGTGATTATATGTCTCCACTCAATGCTAATTCTGAGGAAATAGTAAATTTTGTTAAACCTGATCAGAGAATGAATCCAAAAAGTGTTAAGCAATTTAACCATAAATATGATAATAATTTACATAATTATGGGAATCATAATggatacaaaaattattataagcAGAATATACATTCTGATAGAAATGTGTATGATAATTATGGTTCCAATAGACAAGATATAGATAGTTACTCAGCTTCATCAAGTTTAAGCTTAgatcataaatataaagattatGGTAGAGGTCAACAATTCTATAGAAATAAATTATCAAAACCTAATAATAAAAACTGGAGAAATAATTATTCTAGGCAAGAGAAGTCACAAAGGAAAGTAGATGTTGCTTCCCAAAGAATAAGACTAGAAGAAATGATAAAACTGAGAACCCTTGAGTGTTTAGTGTgctgtgaaattttcaaatactatGATAAAATTTGGAATTGTAAACAGTGTTACCATATATTACACTTGAAATGTACACAAGCATGGGCAAATTCTTCTAAAGTAGAAAATGGCTGGAGATGTCCAGCTTGTCAAAATGTCTGTAAGGATGTACCAAATGAATATCGATGTTTCTGTGAGAAAATAAAGGATCCTAAAAATGAACCAGGATTAGTACCTCATAGTTGTGGAGATGTTTGTCTGAGAGAAGGACGTAATTGTGAACATCGATGCTTGATACTGTGTCACCCTGGACCATGCCCTGACTGTTCTGTAATGGTACAAAAGCAATGTGGCTGTGGCAAAACAGAACAGAGAGTCAAGTGCTGCTCAGATATAGAGATTGTTTGTCAGAATTCATGTGATAAAATATTAGAATGTGGTATACATAAATGTGATGAAAAATGCCATGTAGGAGATTGTAAACCTTGTGAACAAATTTTGAAGCAAATCTGCTTCTGTGGAAAAGAAAATAGGGAAGTAAGTTGTACTGCTGCATTCAGTGGAAGAGAGAATTATTCTTGTCAAGGTAGTTGTGATAAGATGCTCAGTTGTGGAAATCATAAATGCCAAGACATTTGTCATGATGGTCACTGTACACCTTGTAAGAAAGATGTTGACCTTATAACTACATGTTTTTGTGGAAAATCCCCGCTTAAGTTTACCAGAATCAGTTGTTTGGATCCAATTGTTTCTTGTGAAATGGTGTGTCAAAAAATTCTTAGTTGTGGTCCAGCTAATGCACCTCACATTTGCAAGTCCTTATGCCATGATGGGCATTGTCCTCCATGTGATCTTACAACTGTGCTCAAGTGCAGGTGTGGTTTCATGGACAAAGAAATACCATGTCAACAGTTAACTACTAAAGCTGATGATGCTAGGTGTGAAAGGAAATGTACCAAGAAACGCCTTTGCGGAAAGCATAAATGCAACCAGCGTTGTTGCATCGAGATCGACCATATATGCCCTTTGCCATGCAACCGTCTCCTATCTTGCGGTAATCACAGATGCGGCCTTACTTGTCACAGTGGCCGTTGTAAGCCGTGTATAGAGACCAGCTTCGATGAACTTTATTGCGAATGCGGTTCCAGCGTGCTATACCCTCCCGTACCGTGTGGAACGAAGCCTCCTACCTGTGATAAACCTTGCGGAAGACGAAGAGACTGTGGTCACGAAGTTAACCACACATGTCACACAGGGGTCTGTCCACCTTCTACCGTGCTGTGCAAAAGATGGTGTTATGGAAATCATGAGCAGAGAGGCACCATTCCTTGTCATCAGGAAAATTTCAGCTGTGGTTTGCCTTGCGGAAAAAATATGCCCTGCGGAAGACATAAGTGCAACAAGACTTGTCATTTAGGATCATGCCCTGTGCCTTGTAAGCAACCTTGTACTTTTGAGCGTTCTTTATGTGGTCATCCATGCAATGCTCCATGCCATGAACCGCCGTGTCCAGAAACTAATTGCAAGAGTAAAGTACCAGTGGCATGTATGTGCGGAGTTCTAAAGGGTGTTCGCTATTGCAACGAAGTGATTGACGAATTCAGAAATTACGAAATGGCCCTCGTGAGGGAGAAAATGGTCAATATGTCAATGAACAGAGAAGTGGATATAAGTTTTTTGGGTAAAACAAAGAGGCCAGATGTGTTAAAAATATGTTTGCACAGATCCTCAGTGTGGAAAACGAAATCCAACTTTGAGTCCATGTAA
- Protein Sequence
- MSSFNQQQANQTSYQMQDLNGGSSELRETAGIQSTSSGENHPSAKGAIKKSSNYYSRKPKEKYKNNYRNKNNELHFQGNNTTSEWRPFQVQNRSDYMSPLNANSEEIVNFVKPDQRMNPKSVKQFNHKYDNNLHNYGNHNGYKNYYKQNIHSDRNVYDNYGSNRQDIDSYSASSSLSLDHKYKDYGRGQQFYRNKLSKPNNKNWRNNYSRQEKSQRKVDVASQRIRLEEMIKLRTLECLVCCEIFKYYDKIWNCKQCYHILHLKCTQAWANSSKVENGWRCPACQNVCKDVPNEYRCFCEKIKDPKNEPGLVPHSCGDVCLREGRNCEHRCLILCHPGPCPDCSVMVQKQCGCGKTEQRVKCCSDIEIVCQNSCDKILECGIHKCDEKCHVGDCKPCEQILKQICFCGKENREVSCTAAFSGRENYSCQGSCDKMLSCGNHKCQDICHDGHCTPCKKDVDLITTCFCGKSPLKFTRISCLDPIVSCEMVCQKILSCGPANAPHICKSLCHDGHCPPCDLTTVLKCRCGFMDKEIPCQQLTTKADDARCERKCTKKRLCGKHKCNQRCCIEIDHICPLPCNRLLSCGNHRCGLTCHSGRCKPCIETSFDELYCECGSSVLYPPVPCGTKPPTCDKPCGRRRDCGHEVNHTCHTGVCPPSTVLCKRWCYGNHEQRGTIPCHQENFSCGLPCGKNMPCGRHKCNKTCHLGSCPVPCKQPCTFERSLCGHPCNAPCHEPPCPETNCKSKVPVACMCGVLKGVRYCNEVIDEFRNYEMALVREKMVNMSMNREVDISFLGKTKRPDVLKICLHRSSVWKTKSNFESM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -