Cimp001714.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000013.1:559825-565335[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.057 17 8.3 1.9 1 20 458 477 458 478 0.94 2 10 0.21 63 6.5 2.0 1 22 493 514 493 517 0.88 3 10 0.075 23 7.9 0.1 2 22 539 559 538 562 0.89 4 10 0.057 17 8.3 0.7 2 23 574 596 574 596 0.94 5 10 0.0036 1.1 12.0 0.1 1 22 601 622 601 625 0.90 6 10 0.0031 0.94 12.2 0.7 2 23 644 666 643 666 0.97 7 10 0.00011 0.033 16.8 0.1 2 22 672 692 671 692 0.96 8 10 0.0071 2.1 11.1 4.4 1 23 751 772 751 772 0.98 9 10 0.06 18 8.2 4.0 1 23 778 800 778 800 0.93 10 10 2.5 7.3e+02 3.1 0.6 1 12 819 830 819 831 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACTTCGAAGATGATACTCACTTTTGTCTGAAGTGCCATAATACTATCATTGGCCTTGAAAACTATGTCAGCCATCGAAAAAACAATTGTATGAAGCAAGTAGTAGATCACGAAAAATCGCCTTTACCTTGTCAGCTTATCACAGCTGATGAATCTTTCACACTGAAAGCTGATGATTTTTTCTCCTCCTTAGAACTTCAAAGTAGTTCTAAGAAACTTATCCAGTCGTCTAGTTGCGTTAAAAGTTCTAGTGGAATTCTTACTAGAAGTAAGGTAACTGCTTTCGCTAGGGAATCACTAGAACCATCCAAGTCTGGTAAGAATGCTTGGATTGGGGGTCATCAACTCAAGCAGTTAGACTACGATGACAACCAAAGTAAACTAATCAAAGCTGTAGCGAACTTAGAACGCCGAAAAGAAGATATTGGAAGACATAAAGAACTTCCTAGTATACAAGTATATGAGGAAAGTGATGATGAATCTGAAGATTATGACTACGATGATGAAACTTCTGATGAAGATGCTCCTCCTAGAAATCATACTGGAGGAAAATGGAAACCTTCATCCCCAATTTACTGGAAGAGCTCACAGCCTGAACGAGATTGTAAGTCTCCTCTACCTCATTTTACTGGAGGAAAATGGAAACCCACATCGAATAAGAGAATTGTTTCACCCGTTCTGATTGAATCAAAAGGTAAATGGAAATCTGAGCATATTCTATACAAAGATAACGACGATAACCCACCTCCAACATTCACCGGAAGTAAATGGAGCCAATCTAAGAAACAAGAATATTCTTTGCCATCTTCAGATTTCACTAAAGGAAAGTGGAAGCCCAAATTAGAAAATTCCTCCAAATGGAACAATGACTATCCTCCTCCAGAACATACGAAGGGAAAATGGCTTCCCTCGACCAAATCTTCTGGGAAAGAATCTAACCTGAAGCTTTCTGAGGATTCCCCTCTCAGAAAATCTGGTGGAACCGTTCAATATTGGTGTAGACCATGTAACAGGAGACTCGCGTCAAAAGTTGTCTATGAAAGACATCTGAAAtcagaattacatttcaaaagaACTTTACGTGATAATGAACTAGAAGAAAACTTGAATTTCATGAAAGATGAGCGAAGAGTAAAAAGAAAAGCAATTCAAATTGTTAGACCTACTAAAATAGATGATacgaagaaaaagaaaattagaagaaaaatattcgaaaaatgtCAAGTCTGCAATTCTAAAGTTACTATAAATCTAATGGGAAAACATCTTATTTCGCATTATCACTGTAGAAAAGGGGATTTAACATCAGAATCATCCCAAAAAATGATTTTAGATTATATTGAGAGTATAATTCAACAAAGTCCTTTCCAATGTAAAATCtgtagattttttttcaatacccaTACAGATTTTTTAGACCATTGGATTTGTGATAGTCATTTAGCAACTGCTAACAACAAATCAGGGCAATTTCTTTGCTCCTACTGCAAATATACTTGTGAAACTAATGAAATGATGTACCAACATTTAATTTCGCAAGTACATAACGAAGTGGTGTCTGCTATTAATAGATCTGTTCCTATATCCATCAAAAAAGTGAACTATATTCAATGCGATACTTGCGATGAAAAATTTCTGTTGAATATTCAATTGAAGAAACATATTCTCATATCCGGTCACAACACTTCTGAAAACCTTGAAAGTATCGatcctaaatgtaatatttgtaATCAAAAGTTTCTTTCTGAGATAGCACTACAAAGACATAGCAAAAATGTACATAAATTGAAATCTTTCATATGTGGAATTTGTAAGTTGACATTCGCAAGTGCTGCAGAAGTGAAGGCCCACAGAAATAGTGATCAACATTATTATTCTACCTTGGAGAAAAAGAATGCCTCAGACAAAAAGGTTTTAGAAAAGCAGTGTCAATATTGtccagaaaattttgaaaatttcttaaaGCTCAAAGAACACATAAAAATCTCACATACGGAATTCCATTCAAGATGTCCGCAGTGTGGAATGACCTTTACTGTCTCTCAAGAACTCTCAGTTCATCTCCGTACAAAGTCGTGCAAATTTGAAGAACAACCATCGAAGAAAAAGCATACTTGCAGCCAATGTTCTTTCACAACCGATTCATTTTctcagtttttatttcatgaagcTCTACATGGTGAAGCGGCTCTGATGTATCCAGAAAAGTCTTCTGAAGTACATGATAAAAAGCCGACACCGCATTACAAGTGCCCAAAATGCACCAAATTCTTTCCAAAATCTTCACTGGAATGTCATCTTAGAACTCATACTAGAGAAAGACCTTACACGTGTTCACACTGTAAAGCCACGTTCGTGAGAAAAAACAATTGGCTTTTTCATGAGAAAAAgcatattactggaaaaattcCCAACAAGACCAAGATTCCTAAAGAGACTGGTAGACCTTTTTTATGTTCGACATGTGGTGCATCCTTCAAAAAGAGGTAG
- Protein Sequence
- MEDFEDDTHFCLKCHNTIIGLENYVSHRKNNCMKQVVDHEKSPLPCQLITADESFTLKADDFFSSLELQSSSKKLIQSSSCVKSSSGILTRSKVTAFARESLEPSKSGKNAWIGGHQLKQLDYDDNQSKLIKAVANLERRKEDIGRHKELPSIQVYEESDDESEDYDYDDETSDEDAPPRNHTGGKWKPSSPIYWKSSQPERDCKSPLPHFTGGKWKPTSNKRIVSPVLIESKGKWKSEHILYKDNDDNPPPTFTGSKWSQSKKQEYSLPSSDFTKGKWKPKLENSSKWNNDYPPPEHTKGKWLPSTKSSGKESNLKLSEDSPLRKSGGTVQYWCRPCNRRLASKVVYERHLKSELHFKRTLRDNELEENLNFMKDERRVKRKAIQIVRPTKIDDTKKKKIRRKIFEKCQVCNSKVTINLMGKHLISHYHCRKGDLTSESSQKMILDYIESIIQQSPFQCKICRFFFNTHTDFLDHWICDSHLATANNKSGQFLCSYCKYTCETNEMMYQHLISQVHNEVVSAINRSVPISIKKVNYIQCDTCDEKFLLNIQLKKHILISGHNTSENLESIDPKCNICNQKFLSEIALQRHSKNVHKLKSFICGICKLTFASAAEVKAHRNSDQHYYSTLEKKNASDKKVLEKQCQYCPENFENFLKLKEHIKISHTEFHSRCPQCGMTFTVSQELSVHLRTKSCKFEEQPSKKKHTCSQCSFTTDSFSQFLFHEALHGEAALMYPEKSSEVHDKKPTPHYKCPKCTKFFPKSSLECHLRTHTRERPYTCSHCKATFVRKNNWLFHEKKHITGKIPNKTKIPKETGRPFLCSTCGASFKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -