Basic Information

Insect: Cynegetis impunctata
Gene Symbol: PLAGL1
Assembly: GCA_030704885.1
Location: JARQZK010004494.1:63272-65065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.4e-06 0.0016 20.9 0.8 1 23 162 184 162 184 0.98

2 7 1.2e-06 0.00036 23.0 4.9 1 23 190 212 190 212 0.98

3 7 1e-05 0.0031 20.0 5.6 1 23 218 240 218 240 0.98

4 7 0.017 5 9.9 0.9 1 23 247 271 247 271 0.96

5 7 0.1 31 7.5 0.3 2 23 279 300 278 300 0.92

6 7 8.3e-05 0.025 17.2 3.8 1 23 314 336 314 336 0.97

7 7 0.00035 0.11 15.2 2.8 1 23 342 365 342 365 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.4e-06	0.0016	20.9	0.8	1	23	162	184	162	184	0.98
2	7	1.2e-06	0.00036	23.0	4.9	1	23	190	212	190	212	0.98
3	7	1e-05	0.0031	20.0	5.6	1	23	218	240	218	240	0.98
4	7	0.017	5	9.9	0.9	1	23	247	271	247	271	0.96
5	7	0.1	31	7.5	0.3	2	23	279	300	278	300	0.92
6	7	8.3e-05	0.025	17.2	3.8	1	23	314	336	314	336	0.97
7	7	0.00035	0.11	15.2	2.8	1	23	342	365	342	365	0.95

Sequence Information

Coding Sequence: ATGGGTACTCCAGGCGATAATGCGAAGATTGGAAAGGTAGTAAAAGACGAACTCCTGGATTCCTCAGAACAAACGACCGAAGACACTCCTCAAGTTCCATCCACCTCGATAGCCGAAGAAATGGGATTCCTCGTAGCAACACAATCTCAGCACCAGCCGGTCGCCCCAGTTAGCATCCTTGTACAACCAATACCACTACCGCAAATAAGTGGGAAACCCGAAATTTATACGTCAACTAATTTGGAACAGGCACGGTTAGAAGATTATTACACGCAAACTAAGTTCTATCCCAGTTATGAGCCCACTACATCGTATTCACTCAGTCCTATTCAGAAaccatcaaaaatattttatagtttagAGGAACCTGGACCTTCAGGCTTACAAACACCATCCAAATCTAAATCAAGTTCAaatctgttaaaaataaatgtcaagaaAAAAGTGAAACCTCCTTCGAGTTTAGATTCTCCGAAGAAACCATACACTTGTCAAATCTGCCAAAAGAGTTAcgcaaacatcgataaattaaataaacatcaaCAAATTCACTCCACAGTCTCACCATTTAAGTGTGAGCACTGTAAAAAATCATTtagttcaaaatttaaattagtaAGACACATGCTCATTCATTCAGATAGAAAACCATTCAGTTGTACAGTTTGTGAGAGAACTTTCCACAGAAAagatcacttaaaaaatcatatCAAAGTTCATAGTCCAACTAAAAAAGTTTATGTATGCGAAAAAGAGCAATGCAAGAAGGAGTATACCTCTCTGCTCAGCTATAAGAAACATTTAGCATTGCATGCAGCACAAGAGGGCAGCTTGGAGTGTCAAATATGTTCTAGTGTATTTCGAACGAAGGATGATATactgtttcatttgaaaatacatGCAGGAAGTAGAACTGTCAAAGATCCGAACGAAAAGAAATATAGATGCGAGCATTGCGATCGAAAGTTTTTTACCAAGAAGGATGTCCGAAGGCACCTTGTAGTACACACAggtatgagagattttttatgtCAGTTCTGTCCACAAAGATTTGGTAGAAAGGATCACCTAGGCAGGCACATAAAAAAATCTCATTCAAAGAATTTATCTCAGGAAGACTTAGACACTTCTTGTGAGTCTACGTCTGTGAAGATAGAAACTATTGTGAAATCGGAGTTGATAACACCAGAATCAGAACATCATCAAGAAACTTCGGAAGAATTTTTTCCGAGCACTTCCGATATAATGCCATTTGGTCTGGGAGAAAGAAGTCCATCATTAATGAAGTACAAGCCCGAGTTTGAAGAAGTAGCAACCATGGTTGGTACAAAAATATTGCCATATTCTTTAGAAGCAACAACATCAATAATGAAATATGAACCAAAATTTGAAGAACCAGCAGTGGCGGATACACAATTTGCTCAAGGCACTCTAACAGACGATTTGCTAGAATACTCTCTTGATGACGTACAGGAATTCTTTCCCGAGAGCGATATGAACAAATTCCTGGAGGAAAGTGTTAAAGACGACCTGAATCTGATGTTATCGTCACCCTCACGAAGTGAGTTCATACAAATATTCGAGGATATACATCCATCTACATCATCTTCAACTCTCGCTGAAATCGAAGAGTCTAATAACAGCGTATTATTGACGGAAACCGAGGTTCTAAGTAATCCTGAAATTCAGAGATTGTTGCAACCTTCTGAAGAAGCTAACTTACCATTGCCTGGATTCAGTCAAACGTTTCAATCAGTTCCACCTCCCAAGCCACCACCGCCACCACCACCATAG
Protein Sequence: MGTPGDNAKIGKVVKDELLDSSEQTTEDTPQVPSTSIAEEMGFLVATQSQHQPVAPVSILVQPIPLPQISGKPEIYTSTNLEQARLEDYYTQTKFYPSYEPTTSYSLSPIQKPSKIFYSLEEPGPSGLQTPSKSKSSSNLLKINVKKKVKPPSSLDSPKKPYTCQICQKSYANIDKLNKHQQIHSTVSPFKCEHCKKSFSSKFKLVRHMLIHSDRKPFSCTVCERTFHRKDHLKNHIKVHSPTKKVYVCEKEQCKKEYTSLLSYKKHLALHAAQEGSLECQICSSVFRTKDDILFHLKIHAGSRTVKDPNEKKYRCEHCDRKFFTKKDVRRHLVVHTGMRDFLCQFCPQRFGRKDHLGRHIKKSHSKNLSQEDLDTSCESTSVKIETIVKSELITPESEHHQETSEEFFPSTSDIMPFGLGERSPSLMKYKPEFEEVATMVGTKILPYSLEATTSIMKYEPKFEEPAVADTQFAQGTLTDDLLEYSLDDVQEFFPESDMNKFLEESVKDDLNLMLSSPSRSEFIQIFEDIHPSTSSSTLAEIEESNNSVLLTETEVLSNPEIQRLLQPSEEANLPLPGFSQTFQSVPPPKPPPPPPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -