Cimp049567.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- ZBTB41
- Assembly
- GCA_030704885.1
- Location
- JARQZK010003612.1:1573793-1580465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.14 42 7.0 0.4 2 23 285 306 284 306 0.90 2 11 0.72 2.2e+02 4.8 0.2 3 23 321 343 320 343 0.92 3 11 0.011 3.4 10.5 2.0 2 23 350 372 349 372 0.93 4 11 0.054 16 8.3 0.3 2 23 387 408 386 408 0.97 5 11 4.2 1.3e+03 2.4 2.7 1 23 413 435 413 435 0.94 6 11 0.00089 0.27 13.9 0.0 1 23 440 462 440 462 0.98 7 11 4e-05 0.012 18.2 4.0 1 23 468 490 468 490 0.98 8 11 0.0041 1.2 11.9 0.8 2 23 496 517 495 517 0.96 9 11 1.6e-06 0.00049 22.6 0.7 1 23 523 547 523 547 0.97 10 11 0.00024 0.072 15.7 0.7 1 23 553 575 553 575 0.97 11 11 2.6e-05 0.0079 18.8 1.8 1 23 581 604 581 604 0.97
Sequence Information
- Coding Sequence
- ATGGAAACAAATGGAATTACTGAAATCATTATTCCGGATGATAAAGACACGATATGTAGGTTCTGCATGAACATATCTGAAGAACTGATATTCGTAGATGTTGCAGAACAAATATTATTGCCTAAAATAGGAAATATAtgtcttcaaaaaattttagcaaagtTATCCATACAAATCAGTAAATCTGAATTTCTCCCAAAAGGAATTTGTTCAGAATGTCTGACTGTATTggaagatttttttatatttcttgagAAAATACAAAGCAATGAAGAAATACTTGAAAGTGTTTATTCAGAAGAACTTGCCTCTCCAGATGAGAAACCTGTCACTTTTAAAGAAATAGGTGACAGTGAACCAGAATCACTATTAAGAAATAATGAAGATGAAGATGccgaaaattcaaatataattgaaaatgacCATGCTTATGGCAAAAAAATGGgaattatttatgatgaaattgatgatgatgatgatgacgaCGATGAAAATGATATTGTCAATACAGAATTTGAAGAATTCAAAGATTTCATAACATCTTCAAAATCTTCTACCCAGTTCAAATGTTTCGATATAAAACctgaaaaaattctttcaacaaAAGCTTCACTATCCTCTCCACAGGCTTCAACTAGTCAAGAATATAAGAATGTTGATACAGAGTttggaaaatacaaaGTTTATAATACTTCTCCAGATGTGGTCAAAATTAGAGTCCTTGACAGGAAAAAACCTCATAAAAATATCATCCGGTTGAGCCCATTAAGAAAGAACAATAAAGGAAgagtaattataaaaaagaagatattGAAACAGGAAGAAGCTGAGCCAGAACCAATTTGCATAAAACAGTGTGTTTTTTGCACAAGAAAATTTAGTAGTGAAGGTCTTATGATTTTGCATTATGTGGATCATGTGGTACAAGAAACTGAAGGTTTCGTAACTCATAGACCATTTTGTACATATTGCGGGTTACTGATGTCTACCAGTGACGTAGATCTGGAGGATCATATAAAAACCAAACATGAAAATGATGATGACTTACATTGTCATGAATGCCAAATCAAGTTTACTAATATTTCAGAAGTCACTGCtcatgaagaaaaaaatcatgTAGAGGAATATGAAGAATTTGATGAAACATCACAAGCCAATAAATGTCCAATATGTGAGGAAACACATGCTACTATTGATGATTTGATCAAACATTCACTTACCCATATTTCTagaagatacacttgtatgacATGTAAACAAATATTTGTTTGTGATGCTGCTTTGAATGAACATCACAAAGAGCATCCGCAGTATAAATACAAATGTCCAATATGCAAGAAACTAGCATCAGGAAAGCGTGCCTTAGAGGCACACATTGGTACGCATGCTACCACAAGGAACTATGAATGTGACTTGTGTGGCAAGAggtacaaaacaaaaaatcatctGTTCTATCACAGAAGTGTACATTTCAAACCTGACCTCATTTGTGTCCACTGTGCCTATTCAACACCATCATCTAAGGATTTCAACATGCATATGAGGATTCACTCAGATGAAAGGCCATTTCAATGTACATTCAAAGATTGTGGAAAGGCATTCAGAACTAATAGTGCATTGAGTGCACATGTCAAGcaacatttgaatataaaaaattttgcttGCGATATGTGTGATTATAAGACTAGTAGATCAGTTGGATTAACTATACACAAAAGAAAACATACAGGAGAAAGACCATTTATATGTGTATTCTGTTCAAAGACATTCAACAGGAAATGGAGTCTGACCTTGCATTTGAGGAAATTGCATTATGTATCAGATGTGAAACCTGAAATTCAATAA
- Protein Sequence
- METNGITEIIIPDDKDTICRFCMNISEELIFVDVAEQILLPKIGNICLQKILAKLSIQISKSEFLPKGICSECLTVLEDFFIFLEKIQSNEEILESVYSEELASPDEKPVTFKEIGDSEPESLLRNNEDEDAENSNIIENDHAYGKKMGIIYDEIDDDDDDDDENDIVNTEFEEFKDFITSSKSSTQFKCFDIKPEKILSTKASLSSPQASTSQEYKNVDTEFGKYKVYNTSPDVVKIRVLDRKKPHKNIIRLSPLRKNNKGRVIIKKKILKQEEAEPEPICIKQCVFCTRKFSSEGLMILHYVDHVVQETEGFVTHRPFCTYCGLLMSTSDVDLEDHIKTKHENDDDLHCHECQIKFTNISEVTAHEEKNHVEEYEEFDETSQANKCPICEETHATIDDLIKHSLTHISRRYTCMTCKQIFVCDAALNEHHKEHPQYKYKCPICKKLASGKRALEAHIGTHATTRNYECDLCGKRYKTKNHLFYHRSVHFKPDLICVHCAYSTPSSKDFNMHMRIHSDERPFQCTFKDCGKAFRTNSALSAHVKQHLNIKNFACDMCDYKTSRSVGLTIHKRKHTGERPFICVFCSKTFNRKWSLTLHLRKLHYVSDVKPEIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -