Cimp041729.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- RTase
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002912.1:844369-854071[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0052 1.6 11.5 0.1 1 22 426 447 426 450 0.90 2 21 0.0016 0.47 13.2 0.6 1 22 455 476 455 479 0.90 3 21 0.031 9.4 9.1 1.3 1 23 488 511 488 511 0.92 4 21 7.5 2.2e+03 1.6 0.0 8 21 551 564 545 565 0.88 5 21 0.0012 0.37 13.5 0.5 1 22 575 596 575 599 0.90 6 21 1.4 4.1e+02 3.9 0.5 1 22 635 656 635 659 0.89 7 21 0.0012 0.37 13.5 0.5 1 22 668 689 668 692 0.90 8 21 0.89 2.7e+02 4.5 0.5 1 22 728 749 728 752 0.90 9 21 0.15 45 6.9 0.5 1 22 761 782 761 785 0.90 10 21 0.0042 1.3 11.8 0.4 1 22 794 815 794 818 0.91 11 21 0.53 1.6e+02 5.2 0.5 1 22 827 848 827 851 0.90 12 21 0.0027 0.81 12.4 0.4 1 22 860 881 860 884 0.91 13 21 0.0017 0.52 13.0 0.3 1 23 893 917 893 917 0.91 14 21 3.4 1e+03 2.7 0.4 1 22 959 980 959 983 0.88 15 21 0.0025 0.75 12.5 0.8 1 22 992 1013 992 1016 0.91 16 21 0.026 7.8 9.3 0.2 1 22 1025 1046 1025 1049 0.91 17 21 2.7 8.2e+02 3.0 0.5 1 22 1085 1106 1085 1109 0.88 18 21 0.086 26 7.7 1.0 1 22 1118 1139 1118 1142 0.90 19 21 0.004 1.2 11.9 0.3 1 22 1151 1172 1151 1175 0.91 20 21 2.2 6.7e+02 3.2 0.3 1 22 1217 1238 1217 1241 0.89 21 21 1.3 4e+02 4.0 0.6 1 22 1250 1271 1250 1274 0.89
Sequence Information
- Coding Sequence
- ATGCTTGACACGGACCATCATGAGATTGGAGAAATTATACGtgaattgaaaaacaataaatcccCTGGTTATGATGGATTGAAATCAGAAACCTTGAAATCTATTTCAGAATATCTTATTGAACCATTGACatacattataaataaatgtatgtCCTTAGGATGCTGGCCTTCGGCCTTCAAGGACACAATTGTTATTCCAATACACAAGAAAGGTGAAAATGCCTTGGCCAGTAACTACAGGCCAATATCACTGATAACAAACTTTACGAAAATATTCGAGAAGGTCCTAAAGAATAGATTAGTATCATACCTCAATAAGtataaaatattatctgatAGGCAATTCGGTTTCAGGGAGAGTGTTTCCACGCAAGATGCGATAGTTTCCCTAACAAATAGTGTATTTTCTGCCCTGGATAAAAGTATGCCTTGCCTATGCATGTTTATAGATCTAGCTAAGGCATTTGACACCGTTAGTCACCCGCTACTTGTGGAATCTCTAGAAGATATTGGAATAAGAGGTAAACCCCTCACACTCTTCGAAAGCTATATTTCGAACAGAACCCAATGTAGGCTGTTAACAATCAATTTGGAGAAAACCCAGTATATACCGTTCACATGCTACGAATCCAAGACACCTGATTTTAACTATATAGAAATATGTGAAAAAGGATCGATTTCTCATATGCTACCATCAAAAAGTGTAAAGTACTTGGGTGTACTCATTGATGACCATTTGAGACATCTTTGTCACGCATTGCCGcagaaagaattgaaaattgtgtattttgcactTGTAGATAGTCATTTGAAATACGGCATCTTGGCTTGGGGTGCAGCACTCAGAAAGCACATAATACCATTGGAAATTCTACAACGAAGATTCCTGAAACTTATGTTACATAGAAAATGGGACTACTCGACAGAACTAACTTACATTGAGTCAGGAGTGTTTGACATCAGGCAAGAATTCAGTTATAAATGTATTGTCAATTATCACATGAGTAGGAAATTTAAAGAAAGCAATCATGAATATGACACACGTGGAAGAAAATTACACTTGATCCCCTTCATGACAAAATCTATAGGACAGAGATCAAATGAGTTCTTGGCACCCAAACTCTACAACAGCATCCCCGATGAACTTAAAAGCATGTCAaCAAAACAGCTTGTTGGTAATTCAAGAAAGCTTCCAGTTTCAGATGTGGATAATTATCATAAAACTATGTTAGAACAACATATTAAAGATACTGGCCATGATAGTTCACTGCATTTCGTTTGTTCAGTATGTAGTGCTTCATTTGAAACGAAGGATGCTCTTGATCAACATGCAAAAATTTTTGAGCACAATAACAAGACTTATTCATGTGAACCATGTAGGAAAAAATTTGTATCCAAAAAAGACCTGGAACAACATATGGAAAGTTCTGAACATATCATGAAGCATAAAAATGAGACTTATTCATGTAAATCATGTCAAAAAGAATTTGTCGAATTTGACTTGAAACAGCATATGAAAAGTTCTGTACATAACAGagataataaaaattcattacaACATCGTGTAATCTTTCCAACTCAGGACTCtctaaaatatcacataaatgCCACTAAATGTAAATCTGCTCATTCATGTGAACCATCTCATCAAGAATTTGTGGTCAAAAAAGACCTGGAAAAACATATGGAAAGTTCTGTACAACGGCACAACAACGAGGCTTACTCATGTAAACCATGCCAAAAAGAATTTGTGTCCAAAAAAGACCTAGAACAACATATGGATAGTTCTGTACATAACTTTGAGCACAAAATCGAGGATTATTCATGTAAACCTTATCAGAAAGATCTGCAACAAGATATGGAAAGTTCTGTACATAACTCTAATCCCACAAATGAGACTTATTCATGTAAACCATGTCAGAGAGAATTTTTGGCAAAAAAAGACCTGCAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACAAAAGTGAGACTTATTCATGCAAACCATGCCAGAAAGAATTTGTGTCCAAAAAAGACCTAGAACAACATATGGATAGTTCTGTACATAACTTGGAGCACAAAATTGAGGCTTATTCAAGTAAACCTTATCAGAAAGATCTGCAGCAAGATATGGAAAGTTCTGTACATAACTCTAATCCCACAAATGAGACTTATACATGTAAACCATGTCAGAGAGAATTTTTGGCAAAAAAAGACCTGCAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACAAAAACGAGTCTTATTCATGTAAACCATGTCAAAGagaattttttatcaaaagagACCTGGAACAACATATGGAAAGTTCTGGACATAAATTTAAACTCAGAAATGAGACTTATTCATGTTTACTATGTAAGAAAGAATTTGCGGCTAAGCAATATCTGGAGCAACATATGGAAAGTTCTGTACATAACTTTAAACACAAAAACGAGACTTATTCATGTAAACCATGTCGGAGAGATTTTTTGTCCCAAAAAGATCTGGAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACAAAAATGAGACTTATTCATGTGTTCTATGTAAGAAAGACTTTGTTGCCAAACAAGACCTGAAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACCAAAACGAGACATATGCATGTTTACTATGTAAGAAAGAATTTGCTGCCAAAGAATACCTGGAACAACATATGAAAAGTTCTGTACATAACTTTAAGCACAAAAACGAGACTTATTCATGTTTACCATTTCCGAAAGAATATACGGCCAAACAATACCCGGAACAACATATTGAAAGTTATGTACATAACTTTAAACACAAAAACGAGACTTATTCATGTAAACCATGTCAGAGAGATTTTTTGGCCAAAAAAGACCTGGAACAACACATGGAAAGTTCTTTACATAATTTTAAGCAGAAAAACGAGATTTATTCATGTTTTCTATGTAAGAAAGACTTTGTTGCTAAACAAGACCTGAAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACAAAAACGAGTTTTATTCATGTTTTCTATGTAAGATAGAATTTGTGGCCAAACAAGACCTGGAACAACATATGGATAGTTCTATACATAAGTTTGAGCAAACCGAGGCTTATCAGGAAGAATTTTTGTCCAAAAAAGATCAGCAACAACATATGGAAAGTTATGTGCATAACTCTGATCCCACAAATGAGACTTATTCATGTAAACCATGTCGGAGAGAATTTTTGGCAAAAAAAGACTTGCAACAACATATGGAAAGTTCTGTGCATAACTTTAAGCACAAAAACGAGACTTATTCATGTAAACCATGTCAGAGggaattttttatcaaaaaagacCTGAAACAACATATGGAAAGTTCTGGACATAAATTTAAACTCAGAAATGAGACTTATTCATGTGTACTATGTAAGAAAGAATTTGCGGCTAAGCAATACCTGGAGCAACATATGGAAAGTTCTGTACATAACTTTTATCACAAAAATGATACTTATTCATGTTTACCCTTTCCGAAAGAATATACGGCCAAACAATACCTTGATCCACATATTGCAAGTTCTGTACATAACTTTGAGAACAAAAACTTGACTTATTCATGTAAACCATGTCAGAGAGGTTTTTTGGCCAAAAAAGACCTGGAACAACATATGGAAAGTTCTGTACATAACTTTAAGCACAAAAACGAGACTTATTCATGTAAACCATGTCAGAGAGAATTTTTGGCCAAAAAAGACTTGAAACAGCATATGGAAAGTTCTGTTCATAAGAAAgataattcaaattcataa
- Protein Sequence
- MLDTDHHEIGEIIRELKNNKSPGYDGLKSETLKSISEYLIEPLTYIINKCMSLGCWPSAFKDTIVIPIHKKGENALASNYRPISLITNFTKIFEKVLKNRLVSYLNKYKILSDRQFGFRESVSTQDAIVSLTNSVFSALDKSMPCLCMFIDLAKAFDTVSHPLLVESLEDIGIRGKPLTLFESYISNRTQCRLLTINLEKTQYIPFTCYESKTPDFNYIEICEKGSISHMLPSKSVKYLGVLIDDHLRHLCHALPQKELKIVYFALVDSHLKYGILAWGAALRKHIIPLEILQRRFLKLMLHRKWDYSTELTYIESGVFDIRQEFSYKCIVNYHMSRKFKESNHEYDTRGRKLHLIPFMTKSIGQRSNEFLAPKLYNSIPDELKSMSTKQLVGNSRKLPVSDVDNYHKTMLEQHIKDTGHDSSLHFVCSVCSASFETKDALDQHAKIFEHNNKTYSCEPCRKKFVSKKDLEQHMESSEHIMKHKNETYSCKSCQKEFVEFDLKQHMKSSVHNRDNKNSLQHRVIFPTQDSLKYHINATKCKSAHSCEPSHQEFVVKKDLEKHMESSVQRHNNEAYSCKPCQKEFVSKKDLEQHMDSSVHNFEHKIEDYSCKPYQKDLQQDMESSVHNSNPTNETYSCKPCQREFLAKKDLQQHMESSVHNFKHKSETYSCKPCQKEFVSKKDLEQHMDSSVHNLEHKIEAYSSKPYQKDLQQDMESSVHNSNPTNETYTCKPCQREFLAKKDLQQHMESSVHNFKHKNESYSCKPCQREFFIKRDLEQHMESSGHKFKLRNETYSCLLCKKEFAAKQYLEQHMESSVHNFKHKNETYSCKPCRRDFLSQKDLEQHMESSVHNFKHKNETYSCVLCKKDFVAKQDLKQHMESSVHNFKHQNETYACLLCKKEFAAKEYLEQHMKSSVHNFKHKNETYSCLPFPKEYTAKQYPEQHIESYVHNFKHKNETYSCKPCQRDFLAKKDLEQHMESSLHNFKQKNEIYSCFLCKKDFVAKQDLKQHMESSVHNFKHKNEFYSCFLCKIEFVAKQDLEQHMDSSIHKFEQTEAYQEEFLSKKDQQQHMESYVHNSDPTNETYSCKPCRREFLAKKDLQQHMESSVHNFKHKNETYSCKPCQREFFIKKDLKQHMESSGHKFKLRNETYSCVLCKKEFAAKQYLEQHMESSVHNFYHKNDTYSCLPFPKEYTAKQYLDPHIASSVHNFENKNLTYSCKPCQRGFLAKKDLEQHMESSVHNFKHKNETYSCKPCQREFLAKKDLKQHMESSVHKKDNSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -