Basic Information

Insect: Cynegetis impunctata
Gene Symbol: Rreb1
Assembly: GCA_030704885.1
Location: JARQZK010000915.1:62249-77220[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0055 1.6 11.5 4.0 1 23 116 138 116 138 0.98

2 16 0.00047 0.14 14.8 0.5 1 23 152 174 152 174 0.98

3 16 0.00017 0.052 16.2 5.1 1 23 180 202 180 202 0.97

4 16 1.7 5.1e+02 3.6 0.7 1 9 261 269 261 269 0.92

5 16 0.0029 0.87 12.3 4.0 2 23 291 313 291 313 0.97

6 16 2.4 7.1e+02 3.2 3.4 1 19 359 377 359 379 0.88

7 16 0.21 63 6.5 0.1 1 23 508 530 508 530 0.96

8 16 6.8e-06 0.002 20.6 0.7 1 23 539 561 539 561 0.99

9 16 0.00086 0.26 14.0 3.1 1 23 567 590 567 590 0.97

10 16 0.00051 0.15 14.7 3.0 1 23 998 1021 998 1021 0.97

11 16 0.00051 0.15 14.7 0.4 2 23 1239 1260 1238 1260 0.97

12 16 0.13 39 7.1 6.3 1 23 1266 1289 1266 1289 0.97

13 16 0.013 3.9 10.3 1.2 1 20 1317 1337 1317 1338 0.95

14 16 0.14 41 7.1 1.6 1 23 1400 1423 1400 1423 0.94

15 16 0.017 5.1 9.9 0.4 3 23 1470 1490 1468 1490 0.93

16 16 0.0077 2.3 11.0 5.9 1 23 1496 1518 1496 1518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0055	1.6	11.5	4.0	1	23	116	138	116	138	0.98
2	16	0.00047	0.14	14.8	0.5	1	23	152	174	152	174	0.98
3	16	0.00017	0.052	16.2	5.1	1	23	180	202	180	202	0.97
4	16	1.7	5.1e+02	3.6	0.7	1	9	261	269	261	269	0.92
5	16	0.0029	0.87	12.3	4.0	2	23	291	313	291	313	0.97
6	16	2.4	7.1e+02	3.2	3.4	1	19	359	377	359	379	0.88
7	16	0.21	63	6.5	0.1	1	23	508	530	508	530	0.96
8	16	6.8e-06	0.002	20.6	0.7	1	23	539	561	539	561	0.99
9	16	0.00086	0.26	14.0	3.1	1	23	567	590	567	590	0.97
10	16	0.00051	0.15	14.7	3.0	1	23	998	1021	998	1021	0.97
11	16	0.00051	0.15	14.7	0.4	2	23	1239	1260	1238	1260	0.97
12	16	0.13	39	7.1	6.3	1	23	1266	1289	1266	1289	0.97
13	16	0.013	3.9	10.3	1.2	1	20	1317	1337	1317	1338	0.95
14	16	0.14	41	7.1	1.6	1	23	1400	1423	1400	1423	0.94
15	16	0.017	5.1	9.9	0.4	3	23	1470	1490	1468	1490	0.93
16	16	0.0077	2.3	11.0	5.9	1	23	1496	1518	1496	1518	0.98

Sequence Information

Coding Sequence: ATGCAAGGCGTTGTGTTCATGCATCAGAACCCTCAACAAGGCTCCCCGCCCCCAAATAGTACTGCAGtcaaatatcaacagtcaggtctattgatattagatggaaagggaaccacagaaaccttcacccacgtaatgtacaaaatagatatGGAAGTATCTCCTATTCCAAGGATCCACGTAACCAAAGAAAAACTAAGCCAAAGTATACGTAGTGATTCCGGAATATTCTCAACTACTAACAGCTCAATTTCTGATAAATCCCAGAATCTTACGCGCATACATCAAACAGATAATTGCGAAGAACCATCGGATAATCGAAGTGACTGCAGCTCGCCTGATAAATTTTGTTGCCCCATTTGCTCCACCATGTTGACCTCTCAACACGACTTTACACTTCATATTAAGTCTCATAACAGCGATACCGAGATTCAACAAGACAACGACAAAGGTTTCACCTGCAGAATTTGCTTCAAAGTTTTAAGTTCTAGTTCGAGCTTGGACCGCCATGTTTTGGTACATAGTGGAGAAAGACCATTTCATTGCAAATATTGTGGTGATACTTTTACGACCAACGGAAATATGCACAGACATATGCGGGCTCATtctcaaaaaactaaaaactacGAATCTGATGGAAGCACTGATAGCAGTATCAGCAATACcgaattcaataataataaagtgAAATCGAAGCTGAACAAAAAACGCAAATTAGATTGTGAAGATTCGAGCAATAAAAAACCAAGAAACTCTGTTCAAGATGATATTGGTCAATCTTATAAATGCCCTGTTTGTGGTCGTACTGATTTCGATTCTCTTTTAATACTCGAAACTCATATAGGAGACAATCACCCAGACTATCCTGCTAAGTGTCATCAGTGCAACTGCGTTTTTGTGAATCTGAAGCAACTTGAAGTTCATCGATCAACTGCTCATGAAAATATGAACAATAAACATTCAGTTGTGGGTTTCAAGGACCTTACATTTATAGATTTCTCGAGTGAAAAATTTCCACACATTGCGCGATATGAATGCGAGAAGAATTTACATAAAGGTTCTGGTAATTTGAAGTTTCAGTGTAAAAAATGCAACCATGCGTTTCCCTGTTCAAATTCTCTGGAATATCACGAGCAAGATTGTTCGGAAATGGATAAAGGGCTAGATCTATCTGTAACTCAAAAGTTAACGGATATAGAAGTAAAgcgaaatgattttttttctcgtTTAAACCTTCAAGATGTATCTCCTGAAAAGAGTTTTCAACAAATACAATCTAGTCCAACTGTACATCGTTTGTTGCCCGATGGAAATAGTAAAGATCTAGCAGATATTCAGACTATCATATCAATGACGACTAGTGGAAGTCTCCTTCAACAACTTCAGAATAAAACGAACGAAATAACATGTAATCTTCAAAAGCCAAATTTAGAAATTCAACAAGATCTGCCCAAAAATGAAGAAGAGGAAACGCAGGATGCTTTTGCTGTGGAGTTCcgtaaaatgaaattgaaaggaGAATTTCCTTGCAGACTTTGCACTGCAATTTTTCCCAATTTAAGAGCACTGAAAGGTCATAACAGAGCTCATTTGAATGGAAATAATAATGGGTCCTATCGATGCAATATGTGCCCCCATTCATCAGTGGATAAAGCTGCCCTAATTCGACATATGCGTACTCATAATGGGGACCGTCCTTATGAATGTTCGTTATGCAATTACGCATTCACCACGAAAGCGAATTGCGAAAGGCACCTAAGGAATCGCCACGCGAAAACCACTAGAGAAGAAGTGAAAAAAGCTATTATTTACCATCCTTCAGAAGATCCTACTAATGATGATATCAACAAATTATCGAATAGAGACGATTCTAGAAAACCAATCAACTCAACTCATGAAATACTCGAACATAGTCCAGATAAAATCCATTGTTCCACTCCAAAACATGACATTCGATCTATGGCACCAGAAATTATGCATTTTAATCCGCCAGAAAAAAATCCGTTGCTCAATAACTTACAAGTTCTCAAAGAAACACTCAATATGTCATCTACCAAAGAACCcatcaaatttatttcaaacttGAATGAAGttattcgaaatgaaaatttgaaaacgcTCAAGGAATATAGAAATACTCATAATGGAACAATGCCTATTCCTCCATATTTCTCCCCACATTATGGTTTTCAGGCAAAACTAAATAATGTTGCAACATCTCCTACTCCTGGTACACTACAAGTGAAAGATTTAGAATCTCTGAAAATGAATTCgtatgaaaataattcagatgatGAATATGATGAAGAAGATGAAGAGCCTATTGATATGGTTTTAGATTTGAGCAAAAAGAAGCGATCTGATGATGAGCCAACTCCTGCAGAAGAAATTCCACAAGACTTATCAATTAAGGCTTCTCCGCCGTCCCCTACTGCCGTCGTTAATCCGGCTGCGGAAATGTTCCAAGCGAGTTTGCTTCATTCTCCACCGAAAATTGACCCAACAGCATTTTATGCCCAGTGGGCAATATTGAGAAATGGTTTCGCAGGATTGCCAAGCTGGCCAGGATTTCCTATAAATCCATTGTTTTTCCAACAAATTCAAAACCAAGTATCACCTGGGTCGCAGGATATGAAGGAAAGATtgcgaaataatcaactttGTGGCGGGGCAATTATTACTGACAATCGCTTGCATGCCTTACAGCAGATGAGAAATTCTTCACTTGGGCCAATGAATTTCAGTACTTTCAAAGAAGGTAAACATGATGCAGTAGAAAATTCATATTCGATACATAAGAAACCAGATGACGTCACTCAACCACTCAGTCTTAATATAGATCAAAACTTAAGTGATAGTATGACTCTGACTAGCCCTTTGCCACGCCCAAAGCCTGATATCATGCAGTCTCCCAACTCTGTGAAAATGGTTATCAAAAATGGAATATTGATGCCTAAGCAGAAACAAAGAAGATATCGTACTGAAAGACCATTCACCTGTGAGCATTGTTCTGCTCGATTCACTTTACGTTCCAATATGGAACGTCATATCAAGCAACAGCATCCTCAATTCTGGTCTCAACGTCAGCGGGGAAATATAGGAAATCCTGGTAGGAAACCGCAAAATGTACCGATGAAACCAGGTTTCTGCGATTTAAGTATTCCTAACTATGAAATGCAACATAATCAAAGATACGATGAAAATAAAGAACTTTTCAACGAAAAGTTAAAATATGCCATTCTAGCTCAACACCTAAGAGGAGTTAACAATAACTTAACCAATACTGTCAAAAAGGAAGAGGACGAAGAAGATGCTCTAGTTATTGATGAGAACAGCGAAGGAAAACAAACCGAGATGGATCCAAATCGGGAAGCTTATGAAAGAAATCAGGCTATATTGGAAAACAAAATGAAAGAGATGGATTCTGAacaagaaaatttcagaattaaatTAAAAGTGGAAGAGAATCAAGATTTAGTGCCAGTATCTAGACTATTAGATAATGCTTCTCAACAACAGTTCAATGAGTATTTTAAAACCGATTCCGAAGAACATGAAGGTGGAGGAGGTAGCGATGAAGATGAGGAAGGTTTGGTGGCTAGTGGCAGCACAAGTGAAGGAAACGTCTCTGGAACTGATGAAAATAGgtCTGAATCAGAAAATACAGCACCTGCAAAGAAAAAGTCTGCTTATTCTCTGGCACCAAACAGAGTAAGTTGCCCTTACTGTAGTCGTAAATTTCCGTGGACTTCATCTCTCAGACGCCATATCCTCACCCACACTGGCCAAAAACCCTTCAAATGCAGTCATTGTCCACTGTTATTCACTACAAAATCAAACTGTGATAGACACTTGTTAAGAAAACACGGCAACTCTGCGACCACAATTTCCAACGATGCCATCAACAACAACACGAATTATTTGATGCGAAATGTTCCCGAAAGGCCTTTCAAGTGTTCCAACTGTCCAAGCAGCACTTTTTCCACTTATTCCAACTTAAAAAAACACATCAGCTGTAAACATGCTACTAATGCACAAGGCGATGATATAAAAGCTCAAGGTTACGAAGCTGGTAGTTCGGAAGATGAAAAGGTGATCAATATAAAAGAGAATAGAAATGAATGGGAAAATCAACTTCTACATAGTAAGTTACCTAATAACGAACTGCAGCCTAATGCCGTTAACGTTGATCAACCATTCAAATGCCATTTATGCGAATTTTCCTTTGGTGATCGCCAGGAAGCTTTAGATCATCTCAAAGACAAACATTCATCTGAATACGATTTGCTGATGTCGAAAAATGCTTTAGACAGCAGTGCGACAACCCCTGAAGAAAGCACCCACAATGACGAAGAAGACAATGATATCAGAGGAAAATTTCCTGATTACTCTAACAGGAAAGTTATTTGTGCCTTCTGTATGCGTCGGTTTTGGTCAGCCGAAGATCTTCGGAGACATATGCGAACACACACTGGAGAAAGGCCTTTCAGCTGCGATATTTGTCGTAGAAGATTTACCCTCAAACATAGCATGTTACGGCATCGTAAAAAGCACAATGTCAATTTTGACGCAGATGTCGCCATGAATAGCGACGAAGATGGCAACGTTGTTTCTCCTAACCAGGATGGCAACAATGCCACTACCAAACGAACCGAAAAAACTGATGAGTCCGATGGAAATGAAGGTGGTGATTTAATTAGTAACTTACTGGGCATTCGACCATCTTTTATCGATAAAGTGCTGACTGCTACCGCAGACGATGCAGCAAAACTTTTAGGAGTGAAGAACCGTGTTAGAGAGTAA
Protein Sequence: MQGVVFMHQNPQQGSPPPNSTAVKYQQSGLLILDGKGTTETFTHVMYKIDMEVSPIPRIHVTKEKLSQSIRSDSGIFSTTNSSISDKSQNLTRIHQTDNCEEPSDNRSDCSSPDKFCCPICSTMLTSQHDFTLHIKSHNSDTEIQQDNDKGFTCRICFKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRAHSQKTKNYESDGSTDSSISNTEFNNNKVKSKLNKKRKLDCEDSSNKKPRNSVQDDIGQSYKCPVCGRTDFDSLLILETHIGDNHPDYPAKCHQCNCVFVNLKQLEVHRSTAHENMNNKHSVVGFKDLTFIDFSSEKFPHIARYECEKNLHKGSGNLKFQCKKCNHAFPCSNSLEYHEQDCSEMDKGLDLSVTQKLTDIEVKRNDFFSRLNLQDVSPEKSFQQIQSSPTVHRLLPDGNSKDLADIQTIISMTTSGSLLQQLQNKTNEITCNLQKPNLEIQQDLPKNEEEETQDAFAVEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHLNGNNNGSYRCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKAIIYHPSEDPTNDDINKLSNRDDSRKPINSTHEILEHSPDKIHCSTPKHDIRSMAPEIMHFNPPEKNPLLNNLQVLKETLNMSSTKEPIKFISNLNEVIRNENLKTLKEYRNTHNGTMPIPPYFSPHYGFQAKLNNVATSPTPGTLQVKDLESLKMNSYENNSDDEYDEEDEEPIDMVLDLSKKKRSDDEPTPAEEIPQDLSIKASPPSPTAVVNPAAEMFQASLLHSPPKIDPTAFYAQWAILRNGFAGLPSWPGFPINPLFFQQIQNQVSPGSQDMKERLRNNQLCGGAIITDNRLHALQQMRNSSLGPMNFSTFKEGKHDAVENSYSIHKKPDDVTQPLSLNIDQNLSDSMTLTSPLPRPKPDIMQSPNSVKMVIKNGILMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGNIGNPGRKPQNVPMKPGFCDLSIPNYEMQHNQRYDENKELFNEKLKYAILAQHLRGVNNNLTNTVKKEEDEEDALVIDENSEGKQTEMDPNREAYERNQAILENKMKEMDSEQENFRIKLKVEENQDLVPVSRLLDNASQQQFNEYFKTDSEEHEGGGGSDEDEEGLVASGSTSEGNVSGTDENRSESENTAPAKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTISNDAINNNTNYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHATNAQGDDIKAQGYEAGSSEDEKVINIKENRNEWENQLLHSKLPNNELQPNAVNVDQPFKCHLCEFSFGDRQEALDHLKDKHSSEYDLLMSKNALDSSATTPEESTHNDEEDNDIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDADVAMNSDEDGNVVSPNQDGNNATTKRTEKTDESDGNEGGDLISNLLGIRPSFIDKVLTATADDAAKLLGVKNRVRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -