Cimp031370.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002184.1:897051-899366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.5 2.6e+03 1.4 0.1 2 23 307 328 306 328 0.80 2 11 0.021 6.4 9.6 0.2 1 23 345 368 345 368 0.93 3 11 0.003 0.9 12.3 4.5 1 23 373 396 373 396 0.93 4 11 0.046 14 8.6 0.4 1 23 402 425 402 425 0.97 5 11 0.00035 0.1 15.2 2.8 1 23 431 453 431 453 0.96 6 11 0.00023 0.068 15.8 0.8 1 23 459 482 459 482 0.96 7 11 3.9e-05 0.012 18.2 3.1 1 23 493 515 493 515 0.97 8 11 6.4e-06 0.0019 20.7 1.5 3 23 523 543 522 543 0.98 9 11 0.0004 0.12 15.0 5.7 1 23 549 571 549 571 0.96 10 11 5.8e-06 0.0017 20.8 0.8 1 23 577 599 577 599 0.96 11 11 0.00092 0.28 13.9 0.0 1 22 605 626 605 626 0.97
Sequence Information
- Coding Sequence
- ATGGTTCCCACAGATATAATGCAGTTATGTCGCCTATGTTTAGTTGAAGATAGAGTTCAGATTTCGATATTTGGAGAACAAGGTTCCGGAGATGTAAAACAGATATTCCTTAAAATGAGTTCCTGTTTacctgtgaaaatttcaaaaactgacAGTTTGCCGAAAAATATCTGTGTTGAATGTTCTTCGAAACTTGATTCCTTTTATCAATTTTGGAATGATTCAATCCAAGCAGAGAAACAGTTAAACTTATGGTTATCTGATGTTAAAACATGCACAGCAGAAAGAaacaataaaaagttatataattcACACGAAAAGGAACAAATCAATAATAAACTGATGGGTGTTACAGAGATCAAAGAAGAAGCTCTAGATTCAGATGATGAAATATTGTTGGATAGATTGAAGAATTATGATGGATATAGAAGTAAACATCCAAAACTGAATATACAGGTGAATAAAGAGATTCCATCATTGATTCTCTCTAAAAGACCCAAACGTGCAGCTGCAATGAAACAATTTATACAGAATTCGAAGGAATCTGAAACTGAAGATGAAAACGAAGAACTAACAAAAATGGAGGAAGAGTCTGAAGAAAGTGAAGATGATAACGATAGAAATTCTGTCGAAAATCCTAGTCCGTCTCCCACAGAAGAACAACCAAGTACTTCAGGGATAGAAGATTCACCTAATTCACCTACTAACAACAATTCCCAGAACTCAAATCATCTTGTTCCAATTGTAGAGTTGTCGGAAGGTAGTTGGTTGCATAATGAAGATATAACAAGTCCTTTTGCCGCTCAAATAAGCGCAACGTTGAAGAAGTTGGGTTACAAGAACCCATTCGTTTATCCGGAACTTAAAAACAAGAAGAAGGCTTTGAAAAAGCTGGAATCGAAGAACAACACGAAATGGCAATGCATGATATGTTCCGACGTTAAAATCAATAAAGATGAACTGATGCAACACTACGAACTCCACAAGAGCGAAACTGAAACGATTAAGGGAAGCAAACTTTTGGGAGATTATTTTATGTGTCCAGTATGTTTAACGGATTTCACCTCACTTATTAGCTACGAGAAACATGTCGAATTGAATCACGGTGAAAAACAATACAATTGCGAAGTTTGCCATCGagctttcaaaaatttatactcCTTAAGTGTTCATAATCATAAAAGGCATAGTACAGGTAAAGTTTTCAAGTGCTCAGGTTGTGATTTTGAAGATAACGAACTGAAATCGTTAAGAAGTCACATACGAACAGCCcatgaagaaaatgttaagtaTCGTTGCGAAATTTGTAATAAAGGATTCAGCTCTCTATCGTGGTATCATGAACATAAGAATTTTCATACAGGTGCCATGCCATTTGAGTGCGAAGTGTGTTCGAAAAGTTTTCCTTACACTAGGTACTTGATAGCGCATAAGAAAAACATGCATCCAGAAATGTTTTCCACCATGCCGATAAACCATGAGTGTGAGATTTGTCAGAAAAAGTTTGCGCATAAAAAGAGCCTGGTTTTGCATCTTCGTGGGCATACTGGCGAAAGTGCGGTACTCTGTGATATGTGCGGGAAGTCCTTGTCTAGTTCCGAACATCTGAAGCAGCATTTGAGGATTCATACAGGTTATAAACCTCATTGTTGTTCGGTTTGTGGTAAGGGGTTCGCTAAAAAGTGCAATTTAACATTACATGAAAGGGTTCATAGTGGTGAAAAACCGCATATTTGTAATGTTTGTGGTAAAGGTTTCTCACAAAGGTCTACACTTGTGATACATGGACGATACCATTCAGGTGAAAGGCCTTATCGTTGTCAAATTTGTGAGAAGGGGTTTGTAGCTAAAGGGCTTTTAGGGGTACATATGAAGACTTGTGTTGGAATTAttgattga
- Protein Sequence
- MVPTDIMQLCRLCLVEDRVQISIFGEQGSGDVKQIFLKMSSCLPVKISKTDSLPKNICVECSSKLDSFYQFWNDSIQAEKQLNLWLSDVKTCTAERNNKKLYNSHEKEQINNKLMGVTEIKEEALDSDDEILLDRLKNYDGYRSKHPKLNIQVNKEIPSLILSKRPKRAAAMKQFIQNSKESETEDENEELTKMEEESEESEDDNDRNSVENPSPSPTEEQPSTSGIEDSPNSPTNNNSQNSNHLVPIVELSEGSWLHNEDITSPFAAQISATLKKLGYKNPFVYPELKNKKKALKKLESKNNTKWQCMICSDVKINKDELMQHYELHKSETETIKGSKLLGDYFMCPVCLTDFTSLISYEKHVELNHGEKQYNCEVCHRAFKNLYSLSVHNHKRHSTGKVFKCSGCDFEDNELKSLRSHIRTAHEENVKYRCEICNKGFSSLSWYHEHKNFHTGAMPFECEVCSKSFPYTRYLIAHKKNMHPEMFSTMPINHECEICQKKFAHKKSLVLHLRGHTGESAVLCDMCGKSLSSSEHLKQHLRIHTGYKPHCCSVCGKGFAKKCNLTLHERVHSGEKPHICNVCGKGFSQRSTLVIHGRYHSGERPYRCQICEKGFVAKGLLGVHMKTCVGIID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -