Cimp060405.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- RTase
- Assembly
- GCA_030704885.1
- Location
- JARQZK010004339.1:973515-977100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0037 1.1 12.0 0.6 1 23 314 337 314 337 0.97 2 14 0.0027 0.8 12.4 1.6 1 23 343 366 343 366 0.93 3 14 0.028 8.3 9.2 4.0 1 23 372 395 372 395 0.94 4 14 0.012 3.6 10.4 1.4 5 23 404 423 399 423 0.94 5 14 1.8e-05 0.0053 19.3 0.3 2 23 430 452 429 452 0.94 6 14 1.5 4.4e+02 3.8 3.8 1 23 458 481 458 481 0.93 7 14 0.00054 0.16 14.6 4.5 1 23 487 510 487 510 0.98 8 14 0.0056 1.7 11.4 3.0 1 23 516 539 516 539 0.98 9 14 3.3e-05 0.01 18.4 0.1 2 23 546 568 545 568 0.96 10 14 1.4 4.2e+02 3.9 4.2 1 23 574 597 574 597 0.93 11 14 0.00018 0.054 16.1 0.2 1 23 603 626 603 626 0.98 12 14 0.00023 0.069 15.8 1.7 1 23 632 655 632 655 0.98 13 14 0.00092 0.28 13.9 2.9 1 23 661 684 661 684 0.97 14 14 0.00066 0.2 14.4 0.3 1 23 690 713 690 713 0.97
Sequence Information
- Coding Sequence
- ATGCCGCACTTTTCTAATGAGAGAGATATCACTATGGGGGTTCCTCAGGGTAGCATCCTGGGTCCgctgttgtttatagtatacatCAATTCGCTTGCTGAGGCTTGTTCGGGGGACCGCTGCTGTCCGGTAatgtatgcggatgacacaAATTTTCTGGTGAGATCTGTGGACGTTCCGTCAGCTTTGCTTGCCTCTGAGGATGTTCTGGATGGCGTCAATCGTTGGTGTGGCAATAATGGACTTGTGGTCAATATGAAGAAGACTGAATGTCTGTTTTTTTGTTCTGATAGGTCTAGACTGACTCACCCAAATATAATTAGTAATGACAACTGCAGCATTACTGTTCAGGATTCCGTCAGGTTCCTCGGAATTATCattgataaacaacttaaatgGGGACCACATGTTAATCAGCTTAACACTGTATCCTATACATTATACATGCTGAGGGATCAGGTTGacgttaatattttgaagatgcTCTACTACGCCAATTTTCACTCCATTCTTTCATACGGCATCATAATTTGGGGAGGTTCTTCTGATATTGGATGCATATTTGTTGCTCAAAAATGGGCTTTAAGAACTATACTTCGTATGGGATACAGAGAATCTTGTCGTGGCTTGTTTGCGAAGAATAACATCTTGACGAGGCACTATTTTGAGAGTTGCAGAAATAAGAATAACACGCGGCAAATTTATCCCTATTTTTTCCCGCCACATTCAACAGCTCTCCGGGAAAAGGGTACACAGTATATGGCGATTAGTGACCCATCTTTTGTGAAGAAAGAAGGATATGGCGAAGTTGAAGATAGGGATATTCAAGAGGATTTACAAGTAATgatgcaaatgaaaaaacataaattgtATGAATCTGATTTAGAGCATCTCAGAACTTCTCAGACAAAAAATTTTGCTGACTTGCAGCTAAAGACTTATATATGTAATACATGCCTCTTTGAGGCCACAACAAAGGGGCTACTAAAAAAACACATCAATACCTCTCATCTGAAGCTGAAAAATTACCAATGTAAATATTGCGATTACAGTTCTTTTACTAAGAACTACATAAAAAAACACATAGATGCTGTTCATCTGCAGATAAAGAATCACAGATGTCATCTTTGCAGTTACAGTACTTTCTTAAACAGTAACTTGAAACAGCATTTAGAACTAGTTCACCAGAAATTGAAAAAGCATACGTGCGAATGTGGTTATGAAAGTAATAATAGAGATAATCTAAATACACACATAAAGTCTGTTCACGTTAACCATTTGACGCTCAAATGTGATTTGTGCGATTTGGTTTTTACTCGACAGAATCAATTAAAAGTTCACCTAGATTCTGTTCATCTGAAGCTGAAGCAACACAAGTGTCAGCTATGCGATTTTAGTACATTCTCAAAGTTCAAGTGGAAGCAACACTTTGAGGTAGTTCAccagaaattgaagaattataaATGCAATCATTGCTCCTATGAATGCGGTCGTAAAGACACTTTGAATACGCACATAAATTCAGTCcatctgaaattgaaaaattataagtgCGATCAGTGCGATTACGAATGCGGTCTTAAACATACTCTGAATATACACATAAAGTCTGTTCATGGAAACCTCTTGATGCTCAAGTGTGATTTATGCGATTTGGTCTTCGCTCGACAGAATCAGTTGAAAATTCACGTAAATTCTGTTCATTTGAAGTTGGAGCAACACAAATGTCAGCAATGCGATTTCAGTACGTTCTCAAAGTTCAAATGGAAACAACATTTTGAGGTAGTTCACCAGAAACTGAAGAAGTATAAATGTGATCAGTGTGATTACGCGAGTGGTCGTAAAGAGACtcttaatatacatataaactcTGTCCATCTGAAATTGAAGAAGTATAAATGCGATCAGTGCGCTTTTGAAAGTTGTAATAAAAGCAATCTAAATGTACATATAAGATCTGTTCATCAGAAACTGAAGAACTACATATGTGATCAGTGCGCTTACCAATGTAGTCGTAAAGAACATTTGAATGCACACTTAAAATCAGTTCACTTGAAACTGAAGAAGTACAAATGTGATTTATGCGATTATATGATTGATCGAAAGGATAAACTTGAAACACATGTTAATTCTGTTCATCTAAAGTTGAAGTAA
- Protein Sequence
- MPHFSNERDITMGVPQGSILGPLLFIVYINSLAEACSGDRCCPVMYADDTNFLVRSVDVPSALLASEDVLDGVNRWCGNNGLVVNMKKTECLFFCSDRSRLTHPNIISNDNCSITVQDSVRFLGIIIDKQLKWGPHVNQLNTVSYTLYMLRDQVDVNILKMLYYANFHSILSYGIIIWGGSSDIGCIFVAQKWALRTILRMGYRESCRGLFAKNNILTRHYFESCRNKNNTRQIYPYFFPPHSTALREKGTQYMAISDPSFVKKEGYGEVEDRDIQEDLQVMMQMKKHKLYESDLEHLRTSQTKNFADLQLKTYICNTCLFEATTKGLLKKHINTSHLKLKNYQCKYCDYSSFTKNYIKKHIDAVHLQIKNHRCHLCSYSTFLNSNLKQHLELVHQKLKKHTCECGYESNNRDNLNTHIKSVHVNHLTLKCDLCDLVFTRQNQLKVHLDSVHLKLKQHKCQLCDFSTFSKFKWKQHFEVVHQKLKNYKCNHCSYECGRKDTLNTHINSVHLKLKNYKCDQCDYECGLKHTLNIHIKSVHGNLLMLKCDLCDLVFARQNQLKIHVNSVHLKLEQHKCQQCDFSTFSKFKWKQHFEVVHQKLKKYKCDQCDYASGRKETLNIHINSVHLKLKKYKCDQCAFESCNKSNLNVHIRSVHQKLKNYICDQCAYQCSRKEHLNAHLKSVHLKLKKYKCDLCDYMIDRKDKLETHVNSVHLKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -