Cimp070008.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010005057.1:1879519-1881712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.82 2.4e+02 4.6 0.9 3 23 127 148 126 148 0.92 2 13 2.9e-05 0.0086 18.6 4.0 1 23 152 174 152 174 0.98 3 13 4.6 1.4e+03 2.3 0.2 2 22 219 239 218 241 0.77 4 13 0.0014 0.42 13.3 0.2 3 23 251 272 250 272 0.90 5 13 0.16 47 6.9 1.2 1 19 284 302 284 307 0.87 6 13 2.1e-05 0.0063 19.0 1.4 1 23 317 339 317 339 0.94 7 13 2.6e-06 0.00077 21.9 0.9 1 23 345 367 345 367 0.94 8 13 6.2e-07 0.00019 23.9 0.7 1 23 373 396 373 396 0.96 9 13 0.00044 0.13 14.9 3.1 1 23 404 426 404 426 0.98 10 13 5.5e-06 0.0016 20.9 1.0 1 23 432 454 432 454 0.96 11 13 0.0021 0.64 12.7 2.8 1 23 460 483 460 483 0.96 12 13 0.0023 0.69 12.6 5.2 1 23 497 519 497 519 0.97 13 13 0.00015 0.046 16.4 5.3 1 23 525 548 525 548 0.95
Sequence Information
- Coding Sequence
- atgaaaactaatattACCTGTTGCGTGTGTCTAGAAGGAGATTCCCATATTCTCTTAAGTGATGTTAACTCTAACAGTGAtacaatatattcaaaattacaaaCGGTGGTCCCGGACGTACAatggaaaaaaactttttccatATGTTCTAATTGTTTGAGAACTCTAGAAGTCGTTATTGAATTCAGAAATCTATGTTTGAAATCAAGCTCCTACAGAATAGAACAAGAGAAAAATATCTCAATTGGTATAGTAAAAGAAACTGAAGCTTATCATATGAAAAATGTCGAAAGTAGCAAGGATGAACAAATTGGGGGAATAAACAATCAGAACTTTACCGAAGATAAGAATGACTTGGATAAAAGTTCTGATATCCTATGtaaaatatgtataattaaatttgaatctAGTAACCATCTGTATATTCACAACAAGGAAGTTCACAAAACAAGCTATTCCTGTTCGAAGTGTTTTTATAGCTTCACCAAAAAGAGTGATCTGATAAATCATAAAAGGAATCATGAGAGTCTATGTTATAAATTTGAAGCGATTGAAccagaaattattaatttggaAACAGATAAAAAAAAAATCTTGAAGGCTCACATAAAAATCTGTAATACACTGAAAGTTAAAACAGATAATGAAGAAATGAAGTGTAATTTGTGTAATACCTTATTTGTTAGTGACCAAGAAAAATTAGACCATGTTTTGAATGAACACAATGTGAACTTAAAAGCGGAAAATATTTGCCAATATTGTTATAAACAGTTTTCTAGTCCTGAAGAATATAAAGATCATTTAGTGGAAGTTCATTGTGATGATATATTTAAAAGAGAGAAACGTAGTTATTCTTGTGaagtttgttcaaaaatttttagataTGTCAAAGATGTAATTGAGCATTGTGTTAAGGAACATGAAATGGATTCAAAGTTAGTTAAACCATTTCTTTGTGATAAATGCGATACCCGATTTTCAACATCTGGTAACCTAATACAACATAAACAGTACCATGAAGGTACCAGGAGACACATTTGTAGTTATTGTGGTAAAAGCTATATTACGAAAAGTGATTTAACAGCCCACGAATACATTCatttaaataaaagaaactacAAATGCGAAATTTGTGATAGAGCATTCAATactaataaaaatttaagaTCTCATAAATTAGTTGTGCATACAGATTCCAGTCTGTGGAAATATCATTGTAATATGTGTGATAAAAGATTTCCAATGAAATCTGGTTATGATGAACATACTCGTAGACATGCTGGTGATAAACGATTCCCATGTTTAATTTGTTCAAAGTCTTTTGTAAGTAGCACTGAATTGAGGAAACATATGACCTTCCATTCAACGGTAAAGGCCTTTAAATGTTCTCACTGTGATAAGGACTACAAAGATCGTAGAGTTTATGAGATacacttgaccaaagttcatGGTATAGGAAATGCAAAAATTCCTATTCGTGTGAAAAAATTTGCATGTCACGTCTGTCCTAGCACATTTTTTGATAAGCAGAAACTATCTAGACATTTATGTACTCATACAGGTATAAGACCATACGCATGTACGATGTGTGAGAAGAGATTCActgataaattttatttaaaacatcATTTGAAATTTAGACATAATGTTGTTGAgcatcaatttttataa
- Protein Sequence
- MKTNITCCVCLEGDSHILLSDVNSNSDTIYSKLQTVVPDVQWKKTFSICSNCLRTLEVVIEFRNLCLKSSSYRIEQEKNISIGIVKETEAYHMKNVESSKDEQIGGINNQNFTEDKNDLDKSSDILCKICIIKFESSNHLYIHNKEVHKTSYSCSKCFYSFTKKSDLINHKRNHESLCYKFEAIEPEIINLETDKKKILKAHIKICNTLKVKTDNEEMKCNLCNTLFVSDQEKLDHVLNEHNVNLKAENICQYCYKQFSSPEEYKDHLVEVHCDDIFKREKRSYSCEVCSKIFRYVKDVIEHCVKEHEMDSKLVKPFLCDKCDTRFSTSGNLIQHKQYHEGTRRHICSYCGKSYITKSDLTAHEYIHLNKRNYKCEICDRAFNTNKNLRSHKLVVHTDSSLWKYHCNMCDKRFPMKSGYDEHTRRHAGDKRFPCLICSKSFVSSTELRKHMTFHSTVKAFKCSHCDKDYKDRRVYEIHLTKVHGIGNAKIPIRVKKFACHVCPSTFFDKQKLSRHLCTHTGIRPYACTMCEKRFTDKFYLKHHLKFRHNVVEHQFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -