Cimp051555.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010003625.1:383733-386456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5 1.5e+03 2.1 2.3 1 19 88 106 88 109 0.84 2 20 0.48 1.4e+02 5.4 5.9 1 23 138 161 138 161 0.92 3 20 0.14 43 7.0 0.1 6 20 172 186 170 188 0.93 4 20 0.11 33 7.4 0.3 1 23 194 217 194 217 0.90 5 20 0.0011 0.32 13.7 2.3 2 23 290 311 289 311 0.98 6 20 0.069 21 8.0 0.8 1 16 332 346 332 353 0.74 7 20 0.034 10 9.0 1.0 2 23 357 378 356 378 0.97 8 20 0.014 4.2 10.2 0.4 2 23 405 426 405 426 0.96 9 20 2.4 7.2e+02 3.1 1.0 6 23 449 467 444 467 0.93 10 20 0.034 10 9.0 0.2 2 23 480 501 480 501 0.98 11 20 3e-06 0.00091 21.7 4.5 1 23 539 561 539 561 0.98 12 20 0.021 6.2 9.6 0.0 1 21 577 597 577 600 0.89 13 20 5.9e-05 0.018 17.7 0.8 1 23 620 642 620 642 0.96 14 20 0.015 4.5 10.1 0.1 2 23 659 681 659 681 0.94 15 20 0.001 0.3 13.8 0.1 1 23 699 721 699 721 0.94 16 20 0.045 14 8.6 0.1 1 23 750 773 750 773 0.95 17 20 0.47 1.4e+02 5.4 0.5 2 23 783 804 783 804 0.93 18 20 0.00019 0.056 16.1 0.7 1 23 816 839 816 839 0.96 19 20 1.9e-06 0.00058 22.3 1.2 1 23 846 868 846 868 0.98 20 20 0.006 1.8 11.3 0.8 1 23 882 905 882 905 0.96
Sequence Information
- Coding Sequence
- ATGACAATAGATGTTCGCAAATCCACCGATCAAAATTATACAGAAAAAGTTGAATTTGCTGCTGGTCTCCGTTTGATCCAGAGCAATTCAACCCCAATCACAATGGAAAGTTTGTCTCGTATAGAATTGAGTTACATAGAAAAATGCAAGGCGATGGTGGGAATGTACCGGACCTTAATTTGTGCATGTCACAACGTGTCACATCCTAACCTCAAAGGGCTTCTTTCACATCTGAGAGCTCTGAGGATTTGGTTTCCCGTTTTCACCTGTTATCATTGCATGATAACCTTCACGGATAGATCGTCCAGTGGGAAACATCTTCACAAGTGCCCAAAAAAAGACTTAGACACACTTGTAAAGTTATCTAACCTGAGGAAAAGAAGCGTATTGAAAACAAGGttatatcaaaattataaatgtgTTAAATGTCGATTCATGTTTAGTTTTCATGATGATTTCTGCAATCATGTTGATGAGCAACATAGTGAAGGTGATGCTCCTTTTTTTTGTTCATGCCAAAAAAGCTTCGAGAGAGCAGAAGATTATAAAGATCATATATATGTTTCTTGTATGGTAGAATATTATTGCGACATATGTTTCGTTTCTGTGAAAACTTTGAAAGACTTCATTCAGCATGCAGAAGAAAACCATGACAATTCTGAAGGTTTCATACTTCTCCAAGATGATAATTATAAACGACGCtccttcacaaaaattgaaccaagagaaaataaagaaatacttgGTAAAAGGCGTAGTTCAACGTATGGCAGGGCGCCGCCAGTCTTGAAACCAGAAGTAATGGACTTCGAAATGGAAGACAGTGAGGATAACCAAGTATCTAAAGGTTCAAGAAATTCGCCAACAAAATGCCCAGAGTgtgataaaatttattcttgtcAAGCTAACATGCTACGTCATTATAAAACGCATATTGGTACCAAAGATGAACCACAAATGACCAATGGCATTTATATATCAGAGGATACCCTATACCGATGTCCAGATTGTCATATTATGTATAATACGAAAGATTGGGAACTGCATAAAGATTCGCACGATCAGAAAAAATGTTTGGAAtgcaacaaaatatttttattccaaaCTGAACTAGAGCAGCACCGAAGCGTCCACttaaatttgaaagtttacagAGATGCGAAGACTCATTCCTATAAAACTACAATGTTAAGTCCAAATTCCGAATCTCCAGTTTGTGATATCTGCAATATAGTCTGTGAGAATTTCGAAGACTTGGAGAGTCATAAACTATCACACGAAGATCTTATTGAAGAAGACCAGGGTGAAATTGATCCTACAATGGCCAAGTATTCTTGTATACCATGCAACAAACATTATACTGGTTATAGTGGATTGTGGGATCATAATAAAAAGAAGCATTCCGATAAGCAAACGACTACGCATACATATCCGAGACAATGCGATGAATGTGAAAAGGTTATAACTAGCGGTTCTGCTTTTGCAAGTCACAAACAGATGCATAGGCGAGTTAGAGAGGAAACTGCAAGGATGTCCGCTGATCCAAATTCTCCAGATGAGACACCCACACGCTCGAAGGCAAGAAAATCTGGAACTCAAGATGATGAGGATTACTTCACTTGCAAACGTTGTTTCAAAGTGTTTTCAACTAAGTACAATTTGAAAATGCATATGAAACTTCATGGGATTAACATGATGTCCAGTAAAACCcctaaaaattcgaaaaaatacacCTGTGGTGCTTGCAACATCCCGTTTCCAAATGCTGATGCTCTTAGGAGTCATAATGAGGAGGAACATGACGACATGCCAGATCTTGTTAGCGTTATAGAAGAGTTCACTAGTAAACCATATATCTTCACGTGCGATATTTGTGTGCAGACGTTCTCTACAAAGGAAGCTCTGAAACAACACAAGGAAAATCACGCGATTGAAGGGAGCACCTCCAAACAGTTTCTCAATAAAGTTGCGGCATATTGTAAATATTGTAAGATTCCATTTGAAACAATTGAATCGCTTGATGAGCATATGGCAAACGAACACGAGGAATTGCCGAAACCTTCGAAGATATCTAAGCAAACAACGAGCAAAAATTACGCTTGCAAAATTTGTAGGAAGACGTTCGTTTCACAACCCGCTATGTATGCTCATCAGGGATGGCACAAAAGACTCAAAACGGAAGCTTTGCTAAAGTCAGGAAATGTGAAAAAATCCCAAACTACACAACCAAGACAAAAAGCTCCAGAGTTTCAGTGTCCCACATGCAAGTTAGAGTTACCTAACGATACAGctttaaaaattcatattctAGAGAAACATGGAAATATTGCGGCTCTTCTAACACCAAGATGCGAACCTTGCAATCAGGAATTCGTCACAATGACGGAATATGAGAACCATAAAAAATTGCATGAGATAGTGGAAAATCAAAAGAAATTCGTAACGTTTCCGTGCCAATATTGTTCGGCATccttcaacaaaaatgaaacgTTGCAGTCTCACGTTCGCTTGAATCATGCCGAAGTATCTCAAGAGTTCAAATGCGGCCACTGCGGTAGAGTTTTCGATAAACAGGCTTCATTAACAAATCACGTTAAAGTCCACGAAAAACAGAAAGCCGTAGTTGGTAGTCCTAAGCCTTTATATTTCTGTTCTATTTGTAATATGGGTTTCCACATACCAAAAGATTTAAGAACACATACTATAACAGCTCACCCATTCTGA
- Protein Sequence
- MTIDVRKSTDQNYTEKVEFAAGLRLIQSNSTPITMESLSRIELSYIEKCKAMVGMYRTLICACHNVSHPNLKGLLSHLRALRIWFPVFTCYHCMITFTDRSSSGKHLHKCPKKDLDTLVKLSNLRKRSVLKTRLYQNYKCVKCRFMFSFHDDFCNHVDEQHSEGDAPFFCSCQKSFERAEDYKDHIYVSCMVEYYCDICFVSVKTLKDFIQHAEENHDNSEGFILLQDDNYKRRSFTKIEPRENKEILGKRRSSTYGRAPPVLKPEVMDFEMEDSEDNQVSKGSRNSPTKCPECDKIYSCQANMLRHYKTHIGTKDEPQMTNGIYISEDTLYRCPDCHIMYNTKDWELHKDSHDQKKCLECNKIFLFQTELEQHRSVHLNLKVYRDAKTHSYKTTMLSPNSESPVCDICNIVCENFEDLESHKLSHEDLIEEDQGEIDPTMAKYSCIPCNKHYTGYSGLWDHNKKKHSDKQTTTHTYPRQCDECEKVITSGSAFASHKQMHRRVREETARMSADPNSPDETPTRSKARKSGTQDDEDYFTCKRCFKVFSTKYNLKMHMKLHGINMMSSKTPKNSKKYTCGACNIPFPNADALRSHNEEEHDDMPDLVSVIEEFTSKPYIFTCDICVQTFSTKEALKQHKENHAIEGSTSKQFLNKVAAYCKYCKIPFETIESLDEHMANEHEELPKPSKISKQTTSKNYACKICRKTFVSQPAMYAHQGWHKRLKTEALLKSGNVKKSQTTQPRQKAPEFQCPTCKLELPNDTALKIHILEKHGNIAALLTPRCEPCNQEFVTMTEYENHKKLHEIVENQKKFVTFPCQYCSASFNKNETLQSHVRLNHAEVSQEFKCGHCGRVFDKQASLTNHVKVHEKQKAVVGSPKPLYFCSICNMGFHIPKDLRTHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -