Cimp054181.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- Zfpm1
- Assembly
- GCA_030704885.1
- Location
- JARQZK010003664.1:275526-292064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.93 2.8e+02 4.4 0.1 3 23 7 27 5 27 0.95 2 15 2.3 6.7e+02 3.2 2.5 1 23 572 595 572 595 0.83 3 15 0.53 1.6e+02 5.2 0.0 2 23 672 694 671 694 0.92 4 15 0.017 5.1 9.9 1.5 1 23 702 724 702 724 0.98 5 15 0.00015 0.045 16.4 1.4 2 23 727 748 726 748 0.97 6 15 0.00042 0.12 15.0 0.6 1 23 754 776 754 776 0.98 7 15 4.7e-05 0.014 18.0 5.5 2 23 783 804 782 805 0.95 8 15 0.88 2.6e+02 4.5 3.2 5 23 818 836 815 836 0.96 9 15 2.4e-05 0.0073 18.9 2.0 3 23 843 864 842 864 0.97 10 15 0.00063 0.19 14.4 0.0 2 23 880 900 879 900 0.97 11 15 0.0004 0.12 15.0 1.2 1 20 906 925 906 928 0.92 12 15 7.3e-05 0.022 17.4 0.4 1 23 936 958 936 958 0.99 13 15 0.00046 0.14 14.8 4.0 1 23 964 986 964 986 0.98 14 15 5.5e-07 0.00017 24.0 3.3 1 23 992 1014 992 1014 0.98 15 15 0.00057 0.17 14.6 7.2 1 23 1020 1042 1020 1043 0.96
Sequence Information
- Coding Sequence
- ATGGAATCCAGTATTATATGCCCTGTTTGTACTTTATTTCTGAGGCCTGGTATTACTTTGAAAAATCATTTGAGTACTCATCCTAAACAAAAGGTTATAGATGCTTTGGTCAAATTAGCTGAATCTGAAACACAACCTGGTGATGGTACTTCTGAAGAAATATGTTCTAACACCTCTAATCAACCATATAATTCTCTAGCTAATTCAACATGGAATGTAGGAAATATAGAGAATTCCTCTCAATTACTGTTGAATAATGAACTTGACTTCACTATATCTTATGAGGAAATTGTTTCAACTATTCTGGGAATAAAGGATAAGAAATCTTCTGATTCAGATGGCCTTTCTGCTCACTTTGTTAAGAAATGTGTACATTCTCTTGCTTTGCCTCTATATCTATTGTACAACAAGTCGTTACAGTTGGGTCAAATGCCCAGCATATGGAAGAAATCATTAATTACCCCTGTTTTTAAATCAGGAAATAAGCAAGATATTGCAAATTACCGACCTATCACGATTATCGGTACCATCTCAAAGGTGCCTGCCCCGTTCCAAGGCAATCACGTTTTCATATACCAACAGAGTATGAGTACTTCTCAAACAAATTCTTTGAATCCTCACACACAACAGTATATCATACCTGCTGTTCTAAATCCTCAAATGATGCCTTATGTTTATCAACAACAGCAACTTATAATGTCCAGTGGTTCTTGCATTCCTCAAATGCGCCTTATGCCTTTTGAACTTACCAGTCCTCCCACAATGGGCATTTCCTCTCCAACACCCTCAATATGTTCTACAAAAACTGTAATTGAAGAAATTTGcacaaatcatcgtaatgaaaACGAAAATGTTGTTGAAATTCAAGATTCTGAATCTCAGTGTTTAGTTCCATCTAAAGATAGCGAAAATGAAGATCAGAAGAAAGAGGaagaaatcaaatcaaatccTAAAACTGAGGGAATTCATACTGAGAAGTATTTAGAAGAAGAACAAGCTGAGGTAGAATCTATAAGACCAGATGATGTTCAGAGTGAAAGTCAGTGGAATACTAACAGTTCCTCTGAGGAATTGAATAAAGCATGTCAAACTCTATCTGCTCCAAGTTCGTCTCAACAGGATAACTTCacaaaaaaagaagaatatTACTACTTCAACAATGAATCTGAAAATGCAGTTAATTACAGTACAAATGTTCAGTTAGAATCCATATATGAGCAGCAAGATCCAATTTACACAAGTGCAAATATTCTCCAATCGACAGAACATCTGGATTTTGTTGACGTCGATGGGGTGCAAGTTATTATAGGCGATTTTGCGACTAATTCTATAATATCCCAGGTTGATTCTTTTGAAAATGGAACTGAAGGAAATGTGCTGATGAGTATTGGTGAGAATATTCTGGATAATGCTCAAAAGGTTAATTTCAGTACACCACCTGAAATGGAGGAAAGTATGTCTAGAGGTAGTGCACATGTTAATATAAGGGCAGATGAAAGGATGCCTCCAAGAGGTGAATTATCTGGTCAGGAAAGTCTGGGTGGAAATAGTGATATTAACTGGAATAGACTACACTATAATGAAGGAAGTTCTGGTACCTCGTACGATTTATTAGGTGGAGAAGTTTGGGAAGATAGTTCTGATGTAGATTGCCCACAAAATGAAGAGCATGAAGTGCCTTTGGCTATTAACTACACTCCTCCCCCACTGAACTTCAAATGTTCGCAGTGTGAAGAGGCATTCTCATGTCTTCAAGATAGAAAACAACATATTTCAGATAAACATGTAGATGTAGAAGATCCGAATAAGCCGAAATTAAACATAATTGGTGGTCAAATTGGAAAGAAGAAAGTGAAGAAATTGATTGTAAAGTTAAAAAGTGAAACTGAACCAAAATACGACACtgttttcacaaataaaataaaaattgaaaattctgagTTGCAATGCAAATCTGAAACAAGACTCGAAGATTTAAAAGCTGACGAGAATGTGAGCTCAGATTCGAGAACTGTATGCGCTTTATGTAATGCAGTACTGCCAAATGCCAAAGCTCTGAAAGAGCATAAAATGGAGATTCATCGAATTCCaaataattttcgtttcaaGTGTTCAACATGTAATGATACCTTTCCCAATGAGTATAGATACACTGAACATTTAAAGGTTCATCCTCTAGAATGTAAACTTTGTGGAAAGCTTTTCTATAGGAGACAAAATATTCAGCTACACATGAAAAGGCATCTAGGAATCAAACCTTACAAGTGTGATATTTGTGAAAAGGCTTTCTTAACTAAACAGAAGTTAGAGGAGCATCGAAATGTACATACTGGTAATGCTCCTATCAAGTGCAACTTATGTAATGAATCATTCCGACGTCATTCCAATTTGGTACAGCATCGTAATAGGCATCATCTCAAAGTAAAAAAGAAGGTTAAAGACTATGTTTGCCATTGtggagaatattttcattctcgaAAGAAATTAGCTTGGCACAAGGAAACACATGACTCTAAACCAAAGGCTTGTACAAAGTGCAATGAAAAGTTTATTCATCTGGCTAGCCTAACCAGGCACATGAGAAAGGCACATAATGAACGTTATTTACCAAAAGAAGAGAGAAgtattgaaaatgttgaatgtCCCATATGTAAAGGGGTCTTTGTAAAGTCTTCCCTTGAAGTTCACATTCGAACGCACAGTGGAGCAAGGCCTTTTTCGTGCCTAATCTGCAACAAGGACTTCACAACACGGTGGAATCTCAAACTCCACAAGTGGACTCATGCCTCGCGTGTTTCAAAGCCCTTCAAATGTGACCTTTGCAACGGCGCCTTTGTTCGAGAATCTGATTACACGTCTCATATGAATTCACACAAAAGCATCAAGCCTTACACATGCAATTATTGCGGAGCAAGGTTTATACGTAAGTACAACTGTCAACGACATGTCAAAGAACATGAAAATGACAAAACATATAACTGTTCAGTGTGTGGCAAATCCTTTCATCGATCTTATTATTTGAAGGACCACATGAGAGTGCATAGTGGTGTTAGACCATACACATGTCATGTGTGTGGTAAAACATCGACAACTAAGTCCAATCATAATAAACACATTCAAATACATCACGCTCGGGAGCCAGTCAgtactgaaaattaa
- Protein Sequence
- MESSIICPVCTLFLRPGITLKNHLSTHPKQKVIDALVKLAESETQPGDGTSEEICSNTSNQPYNSLANSTWNVGNIENSSQLLLNNELDFTISYEEIVSTILGIKDKKSSDSDGLSAHFVKKCVHSLALPLYLLYNKSLQLGQMPSIWKKSLITPVFKSGNKQDIANYRPITIIGTISKVPAPFQGNHVFIYQQSMSTSQTNSLNPHTQQYIIPAVLNPQMMPYVYQQQQLIMSSGSCIPQMRLMPFELTSPPTMGISSPTPSICSTKTVIEEICTNHRNENENVVEIQDSESQCLVPSKDSENEDQKKEEEIKSNPKTEGIHTEKYLEEEQAEVESIRPDDVQSESQWNTNSSSEELNKACQTLSAPSSSQQDNFTKKEEYYYFNNESENAVNYSTNVQLESIYEQQDPIYTSANILQSTEHLDFVDVDGVQVIIGDFATNSIISQVDSFENGTEGNVLMSIGENILDNAQKVNFSTPPEMEESMSRGSAHVNIRADERMPPRGELSGQESLGGNSDINWNRLHYNEGSSGTSYDLLGGEVWEDSSDVDCPQNEEHEVPLAINYTPPPLNFKCSQCEEAFSCLQDRKQHISDKHVDVEDPNKPKLNIIGGQIGKKKVKKLIVKLKSETEPKYDTVFTNKIKIENSELQCKSETRLEDLKADENVSSDSRTVCALCNAVLPNAKALKEHKMEIHRIPNNFRFKCSTCNDTFPNEYRYTEHLKVHPLECKLCGKLFYRRQNIQLHMKRHLGIKPYKCDICEKAFLTKQKLEEHRNVHTGNAPIKCNLCNESFRRHSNLVQHRNRHHLKVKKKVKDYVCHCGEYFHSRKKLAWHKETHDSKPKACTKCNEKFIHLASLTRHMRKAHNERYLPKEERSIENVECPICKGVFVKSSLEVHIRTHSGARPFSCLICNKDFTTRWNLKLHKWTHASRVSKPFKCDLCNGAFVRESDYTSHMNSHKSIKPYTCNYCGARFIRKYNCQRHVKEHENDKTYNCSVCGKSFHRSYYLKDHMRVHSGVRPYTCHVCGKTSTTKSNHNKHIQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -