Basic Information

Insect: Cynegetis impunctata
Gene Symbol: -
Assembly: GCA_030704885.1
Location: JARQZK010002261.1:310583-319363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.03 9 9.1 1.6 1 23 75 97 75 97 0.98

2 15 0.049 15 8.5 1.6 2 21 103 122 102 123 0.92

3 15 4.4e-05 0.013 18.0 1.0 1 23 136 158 136 158 0.95

4 15 0.0017 0.52 13.0 0.8 3 23 163 184 162 184 0.93

5 15 0.011 3.2 10.5 4.6 1 23 193 215 193 215 0.97

6 15 0.052 15 8.4 0.5 1 23 220 242 220 242 0.97

7 15 0.00011 0.032 16.8 3.5 1 23 248 270 248 270 0.98

8 15 0.0034 1 12.1 1.1 1 23 273 296 273 296 0.95

9 15 0.00018 0.053 16.1 2.5 1 23 305 327 305 327 0.98

10 15 0.0028 0.84 12.4 1.7 2 19 335 352 334 358 0.92

11 15 0.0061 1.8 11.3 0.5 1 23 368 391 368 391 0.94

12 15 0.0041 1.2 11.8 1.9 2 23 399 420 398 420 0.97

13 15 9.9e-06 0.003 20.1 0.4 1 23 427 450 427 450 0.95

14 15 1.4e-08 4.2e-06 29.1 2.8 1 23 456 478 456 478 0.99

15 15 8.7e-05 0.026 17.1 4.6 1 23 484 507 484 507 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.03	9	9.1	1.6	1	23	75	97	75	97	0.98
2	15	0.049	15	8.5	1.6	2	21	103	122	102	123	0.92
3	15	4.4e-05	0.013	18.0	1.0	1	23	136	158	136	158	0.95
4	15	0.0017	0.52	13.0	0.8	3	23	163	184	162	184	0.93
5	15	0.011	3.2	10.5	4.6	1	23	193	215	193	215	0.97
6	15	0.052	15	8.4	0.5	1	23	220	242	220	242	0.97
7	15	0.00011	0.032	16.8	3.5	1	23	248	270	248	270	0.98
8	15	0.0034	1	12.1	1.1	1	23	273	296	273	296	0.95
9	15	0.00018	0.053	16.1	2.5	1	23	305	327	305	327	0.98
10	15	0.0028	0.84	12.4	1.7	2	19	335	352	334	358	0.92
11	15	0.0061	1.8	11.3	0.5	1	23	368	391	368	391	0.94
12	15	0.0041	1.2	11.8	1.9	2	23	399	420	398	420	0.97
13	15	9.9e-06	0.003	20.1	0.4	1	23	427	450	427	450	0.95
14	15	1.4e-08	4.2e-06	29.1	2.8	1	23	456	478	456	478	0.99
15	15	8.7e-05	0.026	17.1	4.6	1	23	484	507	484	507	0.95

Sequence Information

Coding Sequence: ATGCGACAGTTTCGTATGCCAATTCAACATACTAAAAATTTATCGAAATTTAAGAAGCAGATTGGTACTATACTTCGagaattgaaagaatttgacGACAAAGAGAAATATGAGGCATTCTCCTACCTTCAAGGCTGTATATCTGCCTCTAGAGTTAAGAAGCATAGGAACTCTAAAAGACATAAACTTCATACCAAAACACCTATTGTAAAAAGACAAACATATAAATGCAGAGAATGTGAATACGCAACTTCAACAAGGAATGGTATCTTTCATCACATAGATAGCCACGATGGTTTTCCTTTATCTTGTAAAAAGTGTAGAACTactttcaaaaacaatttatcATTTGATTGGCATTTGAAATTCCGTTGTAGTGTTAGAAGTACAAGAAAAGCTCAAACATTCCCTTGTTATGAATGTCCTAGGaaattcTTCTCAAAGCAAAATCTCAATAGACATTTGGATGGTCATAAAAGAAATAACTGCACATACTGTGACCAAGTTATAACAAATAGAAAACATCTTATTCAACACTTATTGGATGTTCATTCAATTAAATTGGAAAGAGCAATACATAAATGTGGAGAATGTGATAAAAGATATGTGAAGAGAAGATCATTATATTACCATAAACAGCAACATTTCACTGATAAATTTGTTTGTTTGGATTGTGGCATTGTTTGTGATATTTATGAGGAAATGAAAGAGCATTATCAAAAGCATGAACAacagaaaaattttgtatgttcCAGATGCAACCAAAAATTTACTAGGAGGCAACAGTATTTGATTCATATGAAGaggCATGATAACTATAAATGTTCAACATGTAATGAGACATTTGCGTCTAAAATGAGAATGATGGTTCACAAACAAAATGGTCATGACGTGGAAGGATTGGGACCAAAGTTTGTATGTCCAGAGTGTGGAAGAGAATTTTTCCATAGAAGCAAGTTGATATTTCATCTAAGAAAACATAATGatGATAAACCTACTCTTAGTTGTCAGTATTGTGATAAATCCTTCCAATCTCCATATGATTATTATAAACATTGTATAACTGTGGCCCATGAAAAAAGTAGCCCTGAAGTTAGTGTTTACATCTGCGAAAGTTGTGGAGGGCAAttccgaaaaaaatatttgttagagCAACACAATTTGAGGGTGCACAAGAATCGTAAAGAATTTGTCACCTGTGAATTTTGTTCTTATAAAACGAAAAATAGGGCAAACATGAATCGTCATCGAGATACACATATAGCCAAtggaaaaatattcatatgTGAACAGTGTGGAAAAGATTTTACTAATTTGGCTAGTCTCAAAAGTCATATATCTTATTCCCATATTCAGaataagCAGTTCAAGTGCAACAAATGTGATAAAACCTTCAAGAGAAATTCTGAATTGATTAGACATCAAGAAACCCATTCCGATATCAGGCCTCATGTTTGTAATGTATGTGGACAGTCATATAAGAGAACTACCCATCTCAGAAGACATGAACAATCAACTCATAAAATAGTTCCACCAATCCGGGGCAAtcagaaaattcaaatcaaTACAGATGGCACTTTCATTCCGGTGCCAAAGATCAAAAAGGAAAAGAAAGTTATTCCACAAGCAATAGATCCCGAACCTACAGTGGTACCTGTTATCGCCTTTGTGGAATCTGAACCTTTAGCATTAGTTAAAAGAAAAGATTATCTTGAATATTCTGATCAAATATTGATTGCTGAACCTCAAGCTGAAATAACTTATTTTGACAGTATTAGTACAGGCCAAGCAAATGTTGGATTTCATAATTTGGACGAGGAAGATATTTTGGATATGTCCATTATGTCAAATAATGTGGAAACACAGTATTTTTTGAATTCACAGTACACAAATGATCAGTTGATCCAAGAATATATAGgtcaagaaaattttcagattgTTGAGGGGCAATTGACAAATTACAGTAATACTACACCTCCTAATcgttatgttttaaataatattgaattttattga
Protein Sequence: MRQFRMPIQHTKNLSKFKKQIGTILRELKEFDDKEKYEAFSYLQGCISASRVKKHRNSKRHKLHTKTPIVKRQTYKCRECEYATSTRNGIFHHIDSHDGFPLSCKKCRTTFKNNLSFDWHLKFRCSVRSTRKAQTFPCYECPRKFFSKQNLNRHLDGHKRNNCTYCDQVITNRKHLIQHLLDVHSIKLERAIHKCGECDKRYVKRRSLYYHKQQHFTDKFVCLDCGIVCDIYEEMKEHYQKHEQQKNFVCSRCNQKFTRRQQYLIHMKRHDNYKCSTCNETFASKMRMMVHKQNGHDVEGLGPKFVCPECGREFFHRSKLIFHLRKHNDDKPTLSCQYCDKSFQSPYDYYKHCITVAHEKSSPEVSVYICESCGGQFRKKYLLEQHNLRVHKNRKEFVTCEFCSYKTKNRANMNRHRDTHIANGKIFICEQCGKDFTNLASLKSHISYSHIQNKQFKCNKCDKTFKRNSELIRHQETHSDIRPHVCNVCGQSYKRTTHLRRHEQSTHKIVPPIRGNQKIQINTDGTFIPVPKIKKEKKVIPQAIDPEPTVVPVIAFVESEPLALVKRKDYLEYSDQILIAEPQAEITYFDSISTGQANVGFHNLDEEDILDMSIMSNNVETQYFLNSQYTNDQLIQEYIGQENFQIVEGQLTNYSNTTPPNRYVLNNIEFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -