Cimp029598.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002169.1:487757-489956[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0074 2.2 11.0 2.4 4 23 169 189 165 189 0.89 2 12 0.015 4.4 10.1 5.7 1 19 207 225 207 228 0.97 3 12 0.0016 0.48 13.1 4.5 1 23 237 259 237 259 0.99 4 12 5.3e-06 0.0016 20.9 3.0 1 23 265 287 265 287 0.97 5 12 4.2e-07 0.00013 24.4 1.3 1 23 293 315 293 315 0.97 6 12 3.9e-05 0.012 18.2 0.3 1 23 321 343 321 343 0.98 7 12 0.023 6.8 9.5 0.5 2 23 363 384 362 384 0.96 8 12 6.1e-07 0.00018 23.9 1.2 1 23 391 413 391 413 0.95 9 12 4.2e-06 0.0012 21.3 6.1 1 23 419 441 419 441 0.98 10 12 2.8e-06 0.00085 21.8 5.6 1 23 447 469 447 469 0.97 11 12 6.6e-07 0.0002 23.8 0.3 1 23 475 497 475 497 0.98 12 12 0.00082 0.25 14.0 3.9 1 23 503 526 503 526 0.95
Sequence Information
- Coding Sequence
- ATGTTACTAGACAAAATGAAAGTGAAGGATTTTTCTGTTTTGTGCAGATGTTGTATGGCTGCTGGTaccattgaaatatttgaaactgttTTTGACACATTATCATTGGCTAGTATAATGGAAAAATGTACTACCACAACACTTTCAGTTGGAGATGAATTGCCAAAGAAAATATGCCAGAAATGTTTTGATAGATTAGTTGCATGTTACTGGTTCATTATTAAATACCTAAAAGTTCAACAATTCCTGACAGAGATGGTACAATCCAGGAAAATTAAAAGTCAGTGCATGGAAGTCATAAGTAAGGATGCTCAAATTGAAGTTACTTCACTCGATAAACAAACTGAAAGCAGCTTGGATTTTTCCACACTACATTcagaaattgatatttctataGATGAAGAGTGTGCAACATGTATTGAAAGTAGTGATGATGACAAGCcactttcaaaattgaaaagacCATTAGGATATTTGCAAAATACAAATTTGTGCAGCGTTAAACCTGAATGTCCTATAACCTTTGATAATAAGCATTTTCTTACCAAACATAAGAAAAAATTCCACAAAAATGTTAAACATAAACCGGATGAagtaattgaaagaaaaaataaaaaatactactgTACTGAATGTAACAAATGCTTCAATTACATTAAGTTATTAGAGAAACATTGTAAAGATACTGGACATCCTGTCCCTAGAAGATATCAGTGTGAAACATgctcaatgaaatttttgactAAATCTTGTCTCAAAACTCACCTTAGGATACATAGTAAGGAGAAACCACATATATGTGATGTTTGTAATATGACATTCAGTTTAAGTTCAAATTTGCAAAGACATAAGAGAAGGCATACAGGGGAAAAGGATTTTTTTTGTGAGATATGCGGACGGGGATTCATTCAGAAACACACTCTCACTATTCATATGCGTATTCACAATGGTGAAACACCATATATATGCCAAGAATGTGGCAAAGGGTATCGAGCTAAACCACTATTAACtcaacatttgaaaaaacacaaaGGTCTGGAAACCTACTACCGGGAGCACTACTTGAAGCATGGCAGCCTTAAAGTTGAGTGTAGCATATGTAAGAAATTGCTTACTAAAAGTGGTTTATACACTCATATGAAGGTACAACATGGAGATGGATTGAAGAAATTTCTATGCAATTTATGTGGAAAGACATATACCTCAAAGAAGTCCTTAGAAACCCATATGAATGTACATACAAGAAAAATAACATATAACTGTGATATATGCACTAAATCTTTTAGTCATCATAACTACCTAAAAACTCATATGCGTATTCATTCTGGAGAAAAGCCTCACTGTTGTGATATATGTGGAAAAACCTTCACCCAAAGAGCGCATTTGGATGGTCACATGAGGACTCATACTGGTGCCAAGCCCTATATTTGCAACTACTGTAACAAATCATTTGCTCTTAAAGGAAATTTAATGGTTCATGTGAGGATTCATACTGGTGAAAAACCACATCGCTGTTCCATTTGTAACAAAGGATTTTTTGATTCAAGCAATAAGAAGAAGCATGAATTTACAGTTCatcaaatgcatcagaataatGTGAAATGA
- Protein Sequence
- MLLDKMKVKDFSVLCRCCMAAGTIEIFETVFDTLSLASIMEKCTTTTLSVGDELPKKICQKCFDRLVACYWFIIKYLKVQQFLTEMVQSRKIKSQCMEVISKDAQIEVTSLDKQTESSLDFSTLHSEIDISIDEECATCIESSDDDKPLSKLKRPLGYLQNTNLCSVKPECPITFDNKHFLTKHKKKFHKNVKHKPDEVIERKNKKYYCTECNKCFNYIKLLEKHCKDTGHPVPRRYQCETCSMKFLTKSCLKTHLRIHSKEKPHICDVCNMTFSLSSNLQRHKRRHTGEKDFFCEICGRGFIQKHTLTIHMRIHNGETPYICQECGKGYRAKPLLTQHLKKHKGLETYYREHYLKHGSLKVECSICKKLLTKSGLYTHMKVQHGDGLKKFLCNLCGKTYTSKKSLETHMNVHTRKITYNCDICTKSFSHHNYLKTHMRIHSGEKPHCCDICGKTFTQRAHLDGHMRTHTGAKPYICNYCNKSFALKGNLMVHVRIHTGEKPHRCSICNKGFFDSSNKKKHEFTVHQMHQNNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -