Cimp013609.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000763.1:628037-629170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0001 0.031 16.9 1.7 1 23 56 79 56 79 0.97 2 11 0.00044 0.13 14.9 1.2 2 23 86 108 85 108 0.93 3 11 4.9e-05 0.015 17.9 6.9 1 23 114 137 114 137 0.95 4 11 5.5e-06 0.0017 20.9 1.3 1 23 143 166 143 166 0.97 5 11 0.00034 0.1 15.3 1.2 1 23 172 195 172 195 0.96 6 11 6e-06 0.0018 20.8 1.4 1 23 201 224 201 224 0.97 7 11 0.00013 0.04 16.5 2.0 1 23 230 252 230 252 0.98 8 11 4.2e-05 0.013 18.1 1.7 1 23 258 281 258 281 0.97 9 11 1.7e-05 0.005 19.4 5.1 1 23 287 310 287 310 0.95 10 11 6.4e-06 0.0019 20.7 0.2 1 23 316 339 316 339 0.97 11 11 4.2e-05 0.013 18.1 1.7 1 23 345 368 345 368 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGAAGTGAGGATGTTAATAGTGAAACTGAATGTACCAAGAACGACAGAAAAGGCGTAAGTGAGATGCTCTCCCCAATACAGATGGAAACGAACTCGCCAAGATGTGACGATCCGATGAACTTGGATGGTATCCGTTCGAAACTGGAGAACCACAAATGTTACTCATGTCACTTATGTGATTTCAGTTCGTCATATAAGAGTTCTCTTACACTGCATATAGAATCAGTTCACTTGAAAGTCAAAAATCTCAAATGccacttatgcgattacagttcaCCATATAAGGGAAGTCTTAAATCCCATATGGAATTCATTCACTTGAAactaaaaaaccacaaatgtcaCTTATGCGACTACAGTTTTTCACATAAGCATCTACTTCAAGATCATATAAACGCGGTTCACTTAAAACTTAAAGCTCATAAATGTGACATATGCGATTATAGTGCGACAAGAAAATGGAACCTTCGAAGCCATATAAAATCTATTCACTTAAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACAATAAAACGGAACCTTCAAGATCATATAAACGCGACTCACTTGAAACTTAAAGATTTTGAATGTGACATGTGCGATTATAGTACGATATCAAAAGGGCACCTTCAAaggcatataaaatatattcacttGAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACAATAAAACAGGACCTTCAAAGGCATATGTATATTCACTTAAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACATTAAAACGGAACCTTCAAAGGCATATAGAATCTATTCacttgaaactaaaaaatcacAAATGTCACTTATGCGACTACAGTTTTTCACATAACAATCAACTTCGAGATCATATAAACGCGATTCACTTGAAACTTGAACCTTTTGAATGTGACATGTGCGATTATAGTACGGTATCAAAAGGGAACCTTCAAATGCATATAAAATCTATTCACTTGAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACATTAAAACGGAACCTTCAAAGGCATATAGAATCTATTCacttgaaactaaaaaatcacAAATGTCACTGA
- Protein Sequence
- MERSEDVNSETECTKNDRKGVSEMLSPIQMETNSPRCDDPMNLDGIRSKLENHKCYSCHLCDFSSSYKSSLTLHIESVHLKVKNLKCHLCDYSSPYKGSLKSHMEFIHLKLKNHKCHLCDYSFSHKHLLQDHINAVHLKLKAHKCDICDYSATRKWNLRSHIKSIHLKLKDYKCHLCDYSATIKRNLQDHINATHLKLKDFECDMCDYSTISKGHLQRHIKYIHLKLKDYKCHLCDYSATIKQDLQRHMYIHLKLKDYKCHLCDYSATLKRNLQRHIESIHLKLKNHKCHLCDYSFSHNNQLRDHINAIHLKLEPFECDMCDYSTVSKGNLQMHIKSIHLKLKDYKCHLCDYSATLKRNLQRHIESIHLKLKNHKCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -