Basic Information

Insect: Cynegetis impunctata
Gene Symbol: -
Assembly: GCA_030704885.1
Location: JARQZK010002519.1:1-10797[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00056 0.17 14.6 0.5 1 23 55 77 55 77 0.98

2 16 0.0019 0.58 12.9 1.1 2 23 83 104 83 104 0.97

3 16 1.6e-05 0.0049 19.4 1.8 2 23 111 132 110 132 0.96

4 16 4.1e-06 0.0012 21.3 1.6 1 23 138 161 138 161 0.97

5 16 0.00083 0.25 14.0 1.9 2 23 168 190 167 190 0.96

6 16 0.036 11 8.9 3.8 1 23 197 219 197 219 0.95

7 16 0.0089 2.7 10.8 0.6 1 23 224 247 224 247 0.93

8 16 0.41 1.2e+02 5.6 3.2 5 23 253 272 252 272 0.91

9 16 2.8e-06 0.00083 21.8 0.5 2 23 279 301 278 301 0.96

10 16 2e-05 0.0059 19.1 0.5 2 23 309 330 308 330 0.98

11 16 1.7e-07 5.2e-05 25.6 0.4 1 23 334 356 334 356 0.98

12 16 0.0012 0.36 13.5 1.2 1 23 362 384 362 384 0.97

13 16 0.0034 1 12.1 6.3 1 23 390 412 390 412 0.96

14 16 0.0045 1.3 11.7 5.4 1 23 418 440 418 440 0.98

15 16 0.2 59 6.6 6.7 1 19 446 464 446 470 0.96

16 16 0.028 8.3 9.2 0.3 2 23 482 504 481 504 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00056	0.17	14.6	0.5	1	23	55	77	55	77	0.98
2	16	0.0019	0.58	12.9	1.1	2	23	83	104	83	104	0.97
3	16	1.6e-05	0.0049	19.4	1.8	2	23	111	132	110	132	0.96
4	16	4.1e-06	0.0012	21.3	1.6	1	23	138	161	138	161	0.97
5	16	0.00083	0.25	14.0	1.9	2	23	168	190	167	190	0.96
6	16	0.036	11	8.9	3.8	1	23	197	219	197	219	0.95
7	16	0.0089	2.7	10.8	0.6	1	23	224	247	224	247	0.93
8	16	0.41	1.2e+02	5.6	3.2	5	23	253	272	252	272	0.91
9	16	2.8e-06	0.00083	21.8	0.5	2	23	279	301	278	301	0.96
10	16	2e-05	0.0059	19.1	0.5	2	23	309	330	308	330	0.98
11	16	1.7e-07	5.2e-05	25.6	0.4	1	23	334	356	334	356	0.98
12	16	0.0012	0.36	13.5	1.2	1	23	362	384	362	384	0.97
13	16	0.0034	1	12.1	6.3	1	23	390	412	390	412	0.96
14	16	0.0045	1.3	11.7	5.4	1	23	418	440	418	440	0.98
15	16	0.2	59	6.6	6.7	1	19	446	464	446	470	0.96
16	16	0.028	8.3	9.2	0.3	2	23	482	504	481	504	0.92

Sequence Information

Coding Sequence: CAAAATATAGAAGCTCTTTTATTACCTGATAGTAAAATCGATGATGAGttagaacaaaattatgaaCTTTCTATGTCTGATTTAGAAAGGGAAATGGATGCAGAAGAGAAAAGACTTGATAGTGTTAATAAGGTGATTAAAACTGAGGGAAATTTGAGCAAGTATCCTTGcaatttttgtgagaaaatataTAACAGTTATCCTGAACTAAGAGAGCATAAAAAAGTTCATTTTATAGAAAAGAGGACATGTACAATATGTGGAATAGTATGCCGGAGTATAGGAAAATTAGAACAGCATAAAAATTCACATTTAGGCCTTAAGCCTTGCGTTTGCGATCAATGTGGAAAGTCATATGGAACTTCAACTCAACTGAGGATTCACAAGAGAATTCATACGGATGAGAAACGGTACAAATGTCAACaatgcaatcaagctttccgcTACAATGGTACCTTAAAAAACCACATAAGACTTTCCCACACAAACATTATGGAAACCACATGCAAAATTTGTTCAATATACTGCACATCTTCAGCGGAATTAAAGAAACATTTATCAACAGTACATGCCAAAAAACCGTACACATTCAACTGCCAACTATGTAATAAGGTCTTCAAAACCGAACAACGGCTGTCGTGTCATCTGAAGGTACATACCGAGTTGAAATTTCCTTGCGAATTTTGCCAAAGAATATACCCCTCCCTGTACCGCCTAAAAAAACACGTCGGAAGGTCTCACATTCCAAATATCTGTGAATGCAACAGGGTGTTTCACGATCGAACCGAATTCACGAAGCACAATAAagaatttcacaaaactcaagATTCCACTGTATGTACTTATTGCGATAAGGAATTCGACAAACCGAAGAACCTTACGGAACATATTCGATTACAACATAAAGGCAACGGGAAGGTGAACAAGTGCCAAAATTgcgaaaaggaattcataaatGCCTCCTTGTTGAGAAATCATGTGAAAATTCACGACAAAAACTTCAAATGCGATTATTGCGGTAAGATCTTTGGTTCGAGGTATAACCTGCAAATACACATGGTCGTCCATACGAAGGAAAGAAACCACAAATGCGAAACTTGCGGTAATATGTACGGTACTAAAATTGCCCTGAAAAATCACCAGTACGTGCATTCAGAGGAACGCAACTTCACCTGTCAAATATGTAGTAAATCGTTCAAGAGCAATCATAGGTTGTATTCTCACAAGTTCTCACACGAGACTGAGAGGAAGTTTGAGTGTGAAATATGTCATTCCAAATTTACTACGAAGCAGTACCTGAACTTCCATATGAAAAAGCATTCAGACTCAAAACCGTTCCAGTGCAAACCTTGCGAAAAACGATTCAAGCATAAGAGATCTTTCGAAAAACATTGCCAACTCGAAAGGCATAAAGTGGCGTTGAATAATTTGAAGGTGGATTTACGTTGTGAATATTGCAACATTAAGATAACCAATGGTGATTGTTTGATTCGGCATATTGCCGAAGTTCATGGAAATAATGAGGTGGAAAAAGTACAGAATCCAAAGGTCGAAGAAGAATTTAACGTGGATAGTCCCGAATGTGAAATTTCTATTGATAATATTGAAACTGAAATCAAAGTAGAACCAGTAGATTTGGTACTTTGA
Protein Sequence: QNIEALLLPDSKIDDELEQNYELSMSDLEREMDAEEKRLDSVNKVIKTEGNLSKYPCNFCEKIYNSYPELREHKKVHFIEKRTCTICGIVCRSIGKLEQHKNSHLGLKPCVCDQCGKSYGTSTQLRIHKRIHTDEKRYKCQQCNQAFRYNGTLKNHIRLSHTNIMETTCKICSIYCTSSAELKKHLSTVHAKKPYTFNCQLCNKVFKTEQRLSCHLKVHTELKFPCEFCQRIYPSLYRLKKHVGRSHIPNICECNRVFHDRTEFTKHNKEFHKTQDSTVCTYCDKEFDKPKNLTEHIRLQHKGNGKVNKCQNCEKEFINASLLRNHVKIHDKNFKCDYCGKIFGSRYNLQIHMVVHTKERNHKCETCGNMYGTKIALKNHQYVHSEERNFTCQICSKSFKSNHRLYSHKFSHETERKFECEICHSKFTTKQYLNFHMKKHSDSKPFQCKPCEKRFKHKRSFEKHCQLERHKVALNNLKVDLRCEYCNIKITNGDCLIRHIAEVHGNNEVEKVQNPKVEEEFNVDSPECEISIDNIETEIKVEPVDLVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -