Cimp065866.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010004425.1:11195-16230[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.9 5.7e+02 3.5 0.1 3 11 90 98 89 101 0.85 2 20 0.0039 1.2 11.9 0.3 2 23 112 133 111 133 0.94 3 20 0.0013 0.38 13.5 2.3 1 23 138 160 138 160 0.97 4 20 0.31 94 5.9 1.2 1 23 164 186 164 186 0.98 5 20 1.8e-05 0.0054 19.3 0.5 1 23 192 214 192 214 0.98 6 20 0.001 0.31 13.7 2.7 1 23 220 243 220 243 0.95 7 20 3.1e-05 0.0091 18.6 0.6 1 23 254 277 254 277 0.97 8 20 0.00011 0.034 16.8 0.1 2 23 286 307 285 307 0.97 9 20 2.3e-07 7e-05 25.2 4.5 1 23 313 335 313 335 0.97 10 20 0.0023 0.68 12.7 2.0 2 23 384 405 383 405 0.96 11 20 4.9 1.5e+03 2.2 1.0 1 23 428 451 428 451 0.92 12 20 0.051 15 8.4 1.5 1 23 455 477 455 477 0.96 13 20 0.87 2.6e+02 4.5 1.8 1 23 482 505 482 505 0.94 14 20 0.024 7.3 9.4 0.5 1 19 511 529 511 533 0.83 15 20 0.00067 0.2 14.3 1.4 1 23 539 562 539 562 0.95 16 20 0.0035 1.1 12.1 0.6 2 23 574 596 573 596 0.97 17 20 4.6e-06 0.0014 21.1 0.3 3 23 609 629 608 629 0.98 18 20 1.2e-05 0.0036 19.8 0.4 1 23 635 657 635 657 0.98 19 20 1.8e-06 0.00054 22.4 0.9 1 23 663 685 663 685 0.98 20 20 0.022 6.6 9.5 0.3 1 20 691 710 691 712 0.90
Sequence Information
- Coding Sequence
- ATGTGGCTgtcCAAAGATCATGTTTTATACGAACTACCTTTTGAAGACGTGAGGATCAAAGAAGAACCTTACGACgaagaggaagaagaagaagaacaaatttTCATCACCGTGGTATCCGATTTCGAATCCGACATAGACTTGCAAACTGTTGTTAAGCTCGAAGACGAAGAAAACATCATAAACGGAGCTAAGATCACCAGAATAAGTTCAAATTATAGACGAAGAGCCGATTACGACGATAAAGACGAAAAGAAGAGCAGTTTATGTCACATatgtggaaaaaaaatttcgcgaatgGTCCCACACATGCGCCGTCACGATCAAAACCTGAATTGCGACGAATGCTTGGAAGTGTTCAGAAGTCAACAGGATTTAGATAAGCACAAAATTTATCATGAAGATAATAAGTACCCTTGTAAAAATTGCACACTTAATTTCCGAACGGCTGTTGAGTTATGTAAACATAGCATTAAGCATTACGGCATTTACAAATGCTCGTTTTGTCAATTTGAAACATCACACGTCGCATCTATTATAGTACACGTGAATAGACATGTAGATAACATGAAGTTCAAGTGCGATATATGCGGCAGAGGCTTCAACACGAAATATGTCATGGAAAGTCACCAGCAGATCCATACCGGCATAAGAAAATACCAGTGCGACTTCTGCCCGAAAAGTTTCACGACAGAAAACTACAAAAAAGGCCACATGAAATTCAATCACAGTAAGGAACTAACAGGAATCGAGACCGTATACAAGTGCGAGGTCTGTAAGAggattttcagtttcgaaaagAGTTTAATACGGCATCTGAGCGTCATTCACGACATCGGAGCCAGTAGGAGGGTCCAGTGTCCCGTTTGTTCGAAAGTTATAgcgaataatttcaatttaaagaTGCACATGACCGTGCATACCGGAGAAAAGAGACATATGTGCGAATTGTGCGGGAAGTCGTTCAGAGACAAAGCTCACCTGAAGAGGCATTATAGAGTGCACGCGAAACGTGGAGAATACATGAAACGAAGTAGGCGTAAAATCAAACACGTAGATGTTTCTAATGAAGATGAAGACTCGGAATGGATTCAAGAAAAACCAACCAAAAAGAGAAGTAGGAAGAAACCAAGAACGAATATAATGTGGACTTGCAAAAAATGTCTGGAGTTTTTCAATACGCGCAAACTTCTACAGGCTCATAAAAAACTCCACATAAGGGAAAACTCTCCTACAACTCAGGCACTCAAAAATTACAAGTTCGACGATGTTTTGGATCTGTACATTTGCAATTTCTGTTCGGCAGAGTGTCAAGAGGAGGATGAAATCAAGAAACACCTTAGTAATAATCATTTAACTAAGTTTGATTGTAGTAATTGCTTGCAGTCTTTCACAGAACCTTACAAATTTTCAGTTCATAACCAAAAACATAATGGAGGAGACTTTTTATGTCCTCTGTGTTCATATAAAACGCCCAGAATGACTTGTATTCAATCTCACATTAACCGAATGCATCTACaaaagtttatttataattgtaAAACTTGCGGGAAAGGATTCAATGATCAGGCTATTTTCCGAGAACATGATAATGAACATTTAGGAATAAAACCTTTTACCTGTGTTGTATGTAATAAGAGTtatgttttttcgaaatatctttTTGCTCACCAGGTTAGATATCACGTTGTTAATATTGAAGGTAAATTGCAAAATAACCAGTGCGGCATTTGCATGAGAATTTTCGCGAAAGATAGTACTTTAGAAAAGCacatgaaaagtcgacatgagAACTATGGAATTCCAAGGGAAAAGAAATTACTTTGCGATATTTGTGGTCAGGGTTTTTCGAGAAATGATAAACTCAAAATTCATTACAGAATTCACACAGGTGTTAAACCATACGCTTGTTCTTATTGTCCTAAAAGCTTCATCAAAAAAGAATATCTGGTGATGCACGAGAGGGTTCATAATGGAGAAAGACCCTACTCCTGTGAGTATTGTGGGAAATGTTTCAATCAGAGTGCCCCCCTTAGAATTCACGTGAGGGGACACACCGGAGAAAGGCCTTATATTTGTCAGATTTGTGAGCAAGGTTTTATTTCTAGGAGTTCGTTgaattttcatagaaaaaattattgtggtGGAAGGCAGGATTTGAACTAA
- Protein Sequence
- MWLSKDHVLYELPFEDVRIKEEPYDEEEEEEEQIFITVVSDFESDIDLQTVVKLEDEENIINGAKITRISSNYRRRADYDDKDEKKSSLCHICGKKISRMVPHMRRHDQNLNCDECLEVFRSQQDLDKHKIYHEDNKYPCKNCTLNFRTAVELCKHSIKHYGIYKCSFCQFETSHVASIIVHVNRHVDNMKFKCDICGRGFNTKYVMESHQQIHTGIRKYQCDFCPKSFTTENYKKGHMKFNHSKELTGIETVYKCEVCKRIFSFEKSLIRHLSVIHDIGASRRVQCPVCSKVIANNFNLKMHMTVHTGEKRHMCELCGKSFRDKAHLKRHYRVHAKRGEYMKRSRRKIKHVDVSNEDEDSEWIQEKPTKKRSRKKPRTNIMWTCKKCLEFFNTRKLLQAHKKLHIRENSPTTQALKNYKFDDVLDLYICNFCSAECQEEDEIKKHLSNNHLTKFDCSNCLQSFTEPYKFSVHNQKHNGGDFLCPLCSYKTPRMTCIQSHINRMHLQKFIYNCKTCGKGFNDQAIFREHDNEHLGIKPFTCVVCNKSYVFSKYLFAHQVRYHVVNIEGKLQNNQCGICMRIFAKDSTLEKHMKSRHENYGIPREKKLLCDICGQGFSRNDKLKIHYRIHTGVKPYACSYCPKSFIKKEYLVMHERVHNGERPYSCEYCGKCFNQSAPLRIHVRGHTGERPYICQICEQGFISRSSLNFHRKNYCGGRQDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -