Cimp010672.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000729.1:447532-466008[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0034 1 12.1 1.2 1 23 288 311 288 311 0.92 2 17 0.00051 0.15 14.7 0.3 1 23 353 375 353 375 0.98 3 17 4.4e-05 0.013 18.0 0.3 1 23 381 404 381 404 0.96 4 17 5.9e-05 0.018 17.7 0.5 1 23 410 432 410 432 0.98 5 17 4.5e-06 0.0013 21.2 0.7 1 23 438 460 438 460 0.98 6 17 0.011 3.3 10.5 0.8 1 23 466 488 466 488 0.98 7 17 3.8e-06 0.0011 21.4 1.8 1 23 494 516 494 516 0.98 8 17 0.00023 0.07 15.8 4.8 1 23 522 545 522 545 0.95 9 17 0.00022 0.066 15.8 1.3 1 23 594 617 594 617 0.95 10 17 0.00011 0.034 16.7 2.6 1 23 708 731 708 731 0.91 11 17 0.00065 0.19 14.4 3.7 1 23 762 784 762 784 0.97 12 17 0.00012 0.037 16.6 2.4 1 23 790 813 790 813 0.95 13 17 0.0029 0.88 12.3 0.3 1 23 819 841 819 841 0.99 14 17 7.4e-05 0.022 17.3 2.6 1 23 847 869 847 869 0.96 15 17 0.00066 0.2 14.3 3.4 1 23 875 897 875 897 0.98 16 17 0.00067 0.2 14.3 0.6 1 23 903 925 903 925 0.98 17 17 0.0081 2.4 10.9 0.8 2 23 933 954 932 954 0.96
Sequence Information
- Coding Sequence
- ATGCAGTTTTCTCTTTCATCATCAGGGTGGATCTTTACTTGCCCAGTTATTCCACTCTTTAGATCTAATGTCGAAAACCAATTCGACCCCGCCAGTGTTGTTAACGTGTCATCTCATTCTGGTTGTGGGGCTTCCTATGTGGGACAAACTTCGCAATCACTAAAACAGCGGATATCATTACACAAAAGTGACATTAAACTAAGACCGAATAGATGCGCTTTGGCTAGTCATGTGAATAAAACTGGACACAATATCAATTTCAGTGAGCGgaaaattttaatgacagagATTATTCCCATGAATGCTGGAATTACTGATACTGTCTCCCAAAATATCATAAGTGGTTTAGGAGATGCCTGTAGGCTCTGTGGTACAAATGACTCAAaattaatagatatttattcagAGGGTCTCCAAAATGATATtccaaacaaaatcaaattgtaTATTCCTGTTCAACTTTCGAGATCTGAAGAAGAATCAGTGGACTGCTGTTTAGAATGTATTTCGACAGTACTTTCTTGGCATGAATTTGTTCAAAAAGCCTTGGAAACATCACAGAAATATAAGAGTTTGTATGACAAATTGGAAGTGGTATCTCAGGATTTAGAGATCAATCAACATCAAGATGTACCACTACCAGCATCCCCAAGTTTGTATGCTTCTGTTCCGAATGCGGAAACAAATATTTTCGAAGACTGCACATCTGAAAACGGTCTTAAATTTGCATATCAGCAAGTCGAAGGCAGTAAGGAAAAAACAGAGGATTACGTGGATGTTATTCCTAACTATGTTGATATTAATAATGGAGATAAGGCGTCAACCAGAAAGTGTGAAATCCAACacattgaagaaatcaactATACGTGCCATTTTTGTACTGAAACATTTTCATCCGAAGATGAAGTACTGAATCACACAGGCGTTACACACCCTGATGTTACAGATAATGAAGAAACCCTTAAGAAAAATAGTAGTAAAAGGAAGTGGAAACGAACAAAAATCGACCCGAAGATTATAAATGCAGCTAAAGTTGTGGTCGATAACAGGGTGTATTACAATTGCAAGGAATGCGGTAAAAGCTTACTTTCACCTTATACATACGTTTGGCACATGCGCATACATACAGGAGAAAGACCGTATGTGTGCGATTTGTGCGGAAAGCAATTCAGAGTATCTCAAGGTCTGGTAAGACATCTAAAAGAAACACACGagagaattaaaaatttttcatgtgaTTTATGTGGTAGAATGTTCGCGACAAAAAGGAACGTAGATGAACACAGAAGAATACATACAAACGAGAGACCCTACATCTGCGCACTCTGCGGAAAAACTTTCAAACAGAAGGCTTCACTGTTTGTTCACAATAGGTCACATTCCAATACTTTTCCATATAAGTGTGAGTCTTGTGATTTGGGGTTCCATATAAAATCAGCTTTAATGGTTCATGTTACGAAACATACAGGACAGAAACCTTATCCGTGTGATGTTTGTGGACGGTGTTTTagaataaaatatgaattaaagCGACATAGACTTGTGCACTCAGAAGATAAACCGTTTTCGTGTTCGTTGTGTGGATTGTGTTTTAAACAAAAGAGATATTTGAGAAATCATTTCAGAGCTAATCATGTCTATGCAGAAAAAGAACCAATTGACCAGTCACTAAAAATAGCAAACGAGTCGACAGATGAAATTGAAACCAGTGAATCAAGTCAGgtttttcaaaataagataGTCATTAAAATACCAGTAAATGAAATCGAAGTTTGCAAATTCTTATGTGAAATATGCACCAAAGGCTTCACAAGAAAATTTGACAAGATTAAACATGTGAGAACTGAACACCCGAATGTAAATTTTGATACTTCTTACAGCGAAACGAATGATCAGTTTTCCCTAGAAAACTCGGAAGTTCTTTTTGACCAAATAGCGCAAGACCATACGTGCAAGAGAACATGTGAAGCTGTTCATACAAAAAATGAACCATTGGACCCTGAAAGGCAGTATGAAGTTTCAGATATTTCACAGGATATCGAAACCACTGAACCAATAGATaacaatcaaaataaaaatttcgtcaaaaaaagacgaaaaaaattcgATGTAGAAGACAGAtttttctgtgaaaaatgtACCAAGGGTTTCACAAGAAAATTTGACTTAAGGAGGCATGTTACAGCTAAACACCCTGATTTAAAATTTGACGATTCGTTCAGTCCAAAGAAaaatagtgaaatattgaataaatgcaGAATTATTGAAAACGGCAAAACTATATTTGAGTGCGATGTTTGCAAACACAGAACCAAGCAATCTTACAATCTGATGAGACATAGAACTATTCATAGTGGCGTAACACCTTATGTATGCCATATTTGCGGAAGAAGATTTCGATTGGAAACTGCTTTCAGGAAACATATTAGTCAATTCCACGAGGGAGTAAAGAAATACAAATGTGAAGTATGTGAGAAGAATTTCGGTATAAAATCCGCTAGAGATGAACACATGAATACTCACTCCGATGCCAGGCCATTTTCATGCGATATCTGTCAAAAATCGTTCAAGCAGAAATCTTCTATGTATGTCCACAAACTTTATCATACCGATAATTACAAATATTCGTGCCAACTTTGCGATAGGAAATTCAGACGTTCTCAAGAAATGGTGCATCACAATAGGATTCACACGGGCCAGAAGCCCTTTTCATGTGATGAGTGTGGGGCAAGGTTCAGATTAGGCCAAGATTTGAAGAAGCACAAGAAGGTTCATTTGAGGAATAACGAGAAATGGGTTTGTGAAAAATGCCGAGCTACTTTTGGTCAGGAAAGGTATCTGAAACTGCATAGGAAgaatcatatttaa
- Protein Sequence
- MQFSLSSSGWIFTCPVIPLFRSNVENQFDPASVVNVSSHSGCGASYVGQTSQSLKQRISLHKSDIKLRPNRCALASHVNKTGHNINFSERKILMTEIIPMNAGITDTVSQNIISGLGDACRLCGTNDSKLIDIYSEGLQNDIPNKIKLYIPVQLSRSEEESVDCCLECISTVLSWHEFVQKALETSQKYKSLYDKLEVVSQDLEINQHQDVPLPASPSLYASVPNAETNIFEDCTSENGLKFAYQQVEGSKEKTEDYVDVIPNYVDINNGDKASTRKCEIQHIEEINYTCHFCTETFSSEDEVLNHTGVTHPDVTDNEETLKKNSSKRKWKRTKIDPKIINAAKVVVDNRVYYNCKECGKSLLSPYTYVWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLKETHERIKNFSCDLCGRMFATKRNVDEHRRIHTNERPYICALCGKTFKQKASLFVHNRSHSNTFPYKCESCDLGFHIKSALMVHVTKHTGQKPYPCDVCGRCFRIKYELKRHRLVHSEDKPFSCSLCGLCFKQKRYLRNHFRANHVYAEKEPIDQSLKIANESTDEIETSESSQVFQNKIVIKIPVNEIEVCKFLCEICTKGFTRKFDKIKHVRTEHPNVNFDTSYSETNDQFSLENSEVLFDQIAQDHTCKRTCEAVHTKNEPLDPERQYEVSDISQDIETTEPIDNNQNKNFVKKRRKKFDVEDRFFCEKCTKGFTRKFDLRRHVTAKHPDLKFDDSFSPKKNSEILNKCRIIENGKTIFECDVCKHRTKQSYNLMRHRTIHSGVTPYVCHICGRRFRLETAFRKHISQFHEGVKKYKCEVCEKNFGIKSARDEHMNTHSDARPFSCDICQKSFKQKSSMYVHKLYHTDNYKYSCQLCDRKFRRSQEMVHHNRIHTGQKPFSCDECGARFRLGQDLKKHKKVHLRNNEKWVCEKCRATFGQERYLKLHRKNHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -