Cimp059190.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010004040.1:9038-11032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00021 0.062 15.9 1.0 1 23 56 79 56 79 0.96 2 20 0.0029 0.86 12.3 3.5 1 23 109 132 109 132 0.98 3 20 0.00073 0.22 14.2 3.8 1 23 138 161 138 161 0.96 4 20 0.0025 0.74 12.6 1.1 1 23 167 190 167 190 0.97 5 20 0.00014 0.041 16.5 6.1 1 23 196 219 196 219 0.96 6 20 0.00011 0.033 16.8 0.5 1 23 225 248 225 248 0.97 7 20 0.00029 0.088 15.5 1.0 1 23 254 277 254 277 0.96 8 20 9.5e-05 0.028 17.0 0.6 1 23 283 306 283 306 0.97 9 20 0.00028 0.084 15.5 1.6 1 23 312 335 312 335 0.97 10 20 5.7e-05 0.017 17.7 5.6 1 23 341 364 341 364 0.95 11 20 1.9e-05 0.0057 19.2 0.6 1 23 370 393 370 393 0.97 12 20 2.8e-05 0.0083 18.7 1.9 1 23 399 422 399 422 0.97 13 20 0.019 5.6 9.8 2.3 1 14 428 441 428 449 0.86 14 20 2e-05 0.0061 19.1 1.9 1 23 455 478 455 478 0.95 15 20 7.8e-05 0.023 17.3 4.3 1 23 484 507 484 507 0.98 16 20 1.6e-05 0.0049 19.4 2.5 1 23 513 536 513 536 0.98 17 20 0.00011 0.034 16.8 3.7 1 23 541 564 541 564 0.97 18 20 5.3e-05 0.016 17.8 3.4 1 23 570 593 570 593 0.96 19 20 1.8e-05 0.0053 19.3 0.6 1 23 599 622 599 622 0.97 20 20 4.6e-06 0.0014 21.1 2.4 1 23 628 651 628 651 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGAAGTGAGGATATTAATAGTAAAACTGATTGTACCAAGAGCAACAGAAAAGACGTAAGTGAGATGCTCTCCTCAATAGAGATAGAAACGAACTCGCCAAGATGTGACGATCCGATGAACTTGGATTGTATCCGTTCGAAACTGGAGAACCACAAATGTTACTCATGTCACTTATGTGATTTCAGTATATCAAGGAAAGTAGCTCTTCAAACGCACATAAAGTtggtccatttgaaaaatcagaaATGCGATTACAGTACGTCACATAGTGCGTACCATCAAAAACATATAAACCCGAAGAACTTGAAACTAAAAAGTTATCAATGTCACTTATGCAAATACATTTCATCACATAATGAAGATATAACAAAGCATATAAAATCAGTTCACTCGAAAGTCAGAAATCATAAATGTCACTTATGCGATTTCAGTTCGTCATATAAGAGTTCTCTTACAATGCATATAGAATCAGTTCACTTGAACCTCAGATATTATAAATGTCACTTATGCGATTATAGTGCGACAATAAAACGGAAACTTCAAATCCATATAGAATCTATTCActtgaaactaaaaaattacAAATGTCACTTATGCGACTACAATTTTTCACATAAGCATCTACTTCAATATCATATAAACGCGGTTCACTTGAAGCTTAAAGCTCATAAATGTGACATATGCGATTATAGTGCCACAGCAAAAGGGAACCTTCAAAGTCATATAAAATCTATTCacttaaaactgaaaaattacaaATGTCAATTATGCGACTATAGTATTTCACATAAGCGTCTACTTCAAGATCATATAAACGCGGTTCACTTGAAACTTAAAGCTCATAAATGTGACATATGCGATTATAGTGCGACAGCAAAAGGGAGCCTTCAACGTCATATAAAATCTATTCActtgaaactgaaaaattacAAATGTCACTTATGCGATTATAGTACGTCAATAAAACGGGACCTTCGAAGCCATATAGAATCAGTTCacttgaaactaaaaaatcacAAATGTCACTTATGCGACTACTGTTTTTCACGTAACACTCTTCTTCGAGATCATATTAACGCGATTCACTCGAAACTTAAAGCTCATAAATGTGACATATGCGATTATAGCGCGATAACAAAAGGGAACCTTCAAAGTCATATAAAATCTATTCACTTGAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACAAGAAAACTGAACCTTCGACGCCATATAGAATCTATTCacttgaaactaaaaaatcacAAATGTCACTTATGCGACTACAGTTTTTCACATAAGTATCGATATCATATAAACGCGGTTCACTTGAAACTTAAAACTCATTTTTGTGACATATGCGATTATAGTGCGACAACAAAAAGAAACCTTCAACGTCATATAAAATCTATTCACTTGAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACAAGAAAACGGCACCTTCGAGACCATATACAATCTATTCACCTGAAACTGAAAGATTACAAATGTCACTTATGCGATTATAGTGCGACAACAAAACGGAACCTTCGAGACCATATAAAATCTATTCACTTGAAATTGAATTACAAATGTCACTTATGCGATCATAGTGCGACAAGAAAACGGAACCTTCGAAGCCATATAGAATCTGTTCActtgaaactaaaaaattacAAATGTCACTTATGCGACTACAGTTGTTCACGTAACACTCTTCTTCGAGATCATATTAACGCGATTCACTCGAAACTTAAAGCTCATGAATGTGACATATGCGATTATAGTGGGACAACAAAATGGAACCTTCAAAGTCATATAAAATCTATTCACTTGAAACTGGAAGATTACAAATGTCACTTATGCGATTATAGTGTGACAAGAAAACGGAACCTTCGAGACCATATAAATTCTATTCACCTGAAACTAAAGAGAGAAGAGAGAACCTTCAAAGGCATATAA
- Protein Sequence
- MERSEDINSKTDCTKSNRKDVSEMLSSIEIETNSPRCDDPMNLDCIRSKLENHKCYSCHLCDFSISRKVALQTHIKLVHLKNQKCDYSTSHSAYHQKHINPKNLKLKSYQCHLCKYISSHNEDITKHIKSVHSKVRNHKCHLCDFSSSYKSSLTMHIESVHLNLRYYKCHLCDYSATIKRKLQIHIESIHLKLKNYKCHLCDYNFSHKHLLQYHINAVHLKLKAHKCDICDYSATAKGNLQSHIKSIHLKLKNYKCQLCDYSISHKRLLQDHINAVHLKLKAHKCDICDYSATAKGSLQRHIKSIHLKLKNYKCHLCDYSTSIKRDLRSHIESVHLKLKNHKCHLCDYCFSRNTLLRDHINAIHSKLKAHKCDICDYSAITKGNLQSHIKSIHLKLKDYKCHLCDYSATRKLNLRRHIESIHLKLKNHKCHLCDYSFSHKYRYHINAVHLKLKTHFCDICDYSATTKRNLQRHIKSIHLKLKDYKCHLCDYSATRKRHLRDHIQSIHLKLKDYKCHLCDYSATTKRNLRDHIKSIHLKLNYKCHLCDHSATRKRNLRSHIESVHLKLKNYKCHLCDYSCSRNTLLRDHINAIHSKLKAHECDICDYSGTTKWNLQSHIKSIHLKLEDYKCHLCDYSVTRKRNLRDHINSIHLKLKREERTFKGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -