Cimp005415.2
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- AAEL008004
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000069.1:119198-132045[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-07 3.1e-05 25.8 0.1 1 43 11 53 11 54 0.95
Sequence Information
- Coding Sequence
- ATGTCCAAACGTGGGAAGTATGGACGTTGGACGGAACAGGAGATGTCTATGGCTATTGGAGCTTATAGGGCTGGCGAGGCAGGTTTGAACGAATGTGCTCGAagatataatattaaaaaatctaCACTGCTAAGATACCTTAGGGGTTCTAACACACTAGCTGAAGAAAACTTTGAAGAAATGCTCTACGGATTTTCAGTAATCGATATACGACGTTTAGCTTTCCAGTTGGCCGAAAAACACAACCTACCCCATCCGTTTAATCGGGAGAAGAAAGCTGCAGGTAAAAAATGGTTTTACGCCTTTATGAAGAGACATCCAGATTTATCTGTATGCCAGCCTGAATCAACATCGCTTGCCAGAGCACGAGGTTTCGAGAGAAGCAAAGTAATTcagttttttgatatactaGAAAAACTTGTCGACAAATACAAAATTAGTGCAAATACTATATTCAACGTTGATGAATCTGGCTACACAACGGTCCAGAAAAGGATGCAAAAGGTAGTGTCCAAAAAGGGAAAACGACAAGTTAGTGGAATATCTAGTGGAGAGCGAGGTGTCAACACTACAAGGGTCTGTTGCTGTAACGCCGCTGGTCTATACGTTCCCCCTATGCTCATATTCAAAAGGAAAAGATTCGCACCGGAACTTGCTCGTGGAGCTCCAACTGGGAGCCttattgaaatttcagataGTGGCTATATTCACAGCGAACTTTTTGTCAAGTGGCTTAAACATTTTCATAGTTTGATTCAACCCAATGAAGAGAAACCAGTACTTGTGCTGCTGAATATTCAAACTCCAAACCAAATGAGGGTTGGGCCAGATGTCAGAATTGCTCCAAATGGGCACATGAACAGTGTGCTGGACTCGAAGGGAATGAAGATTTCAATTGAGAATTTTGCTCGGATATTCTTCATATTGAAGAAGAATAATAGACAAATTAGTCATTTGCACATTTATCACCATACCATGATGATTATGCTCAGCTGGATAGGACTGAAATTTGTGGCTGGAGGTCAAAGTTTAATTCTTGGAATTGCTAATACATTTGTACATAGTATAATGTACTCATACTATTTACTATCAGCAATTGATGATAGATTCAAAGGAAATGTAACAATCAAGAAGTTCGTAACACAAATCCAAATAGTGAGTATAGCCAAAACTGAAAGACTGTGTAAAGAGTTATATACTGTTCTATATCAGAATTCTCCTTAG
- Protein Sequence
- MSKRGKYGRWTEQEMSMAIGAYRAGEAGLNECARRYNIKKSTLLRYLRGSNTLAEENFEEMLYGFSVIDIRRLAFQLAEKHNLPHPFNREKKAAGKKWFYAFMKRHPDLSVCQPESTSLARARGFERSKVIQFFDILEKLVDKYKISANTIFNVDESGYTTVQKRMQKVVSKKGKRQVSGISSGERGVNTTRVCCCNAAGLYVPPMLIFKRKRFAPELARGAPTGSLIEISDSGYIHSELFVKWLKHFHSLIQPNEEKPVLVLLNIQTPNQMRVGPDVRIAPNGHMNSVLDSKGMKISIENFARIFFILKKNNRQISHLHIYHHTMMIMLSWIGLKFVAGGQSLILGIANTFVHSIMYSYYLLSAIDDRFKGNVTIKKFVTQIQIVSIAKTERLCKELYTVLYQNSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -