Cimp042674.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002925.1:573869-575812[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-08 5.6e-06 28.1 0.1 4 40 20 55 17 60 0.90
Sequence Information
- Coding Sequence
- ATGCCTACgaaatatataagaaaaccaggtTCCACAAGAGGTTCTTGGTCGGAAGTTGCTCTTCAGCGAGCGAAAACCGCAGTAAGAAATGGTATGGGAATAAACTTGGCTTCCAGAACTTTTAATATACCATCAAGGACATTACGGCGTCGGGTGCAGAATAATGACGCATCAAAAAAACCCATGGGACCAACAGGAAGTTTAGGAATGGCTAATGAGTTGAAGTTAGTAGCTCACATTAAAAAGCTACAAAAGAGAGGATTTGCTCCCACTCGAGATGATTTGAGGACCATGGCATATGAATTTGCGGTAGAACTTAAATTAAACCATAGGTTTAACCATGAGGAAGAAAAAGCTGGTTACGATTggttaaatttgtttttgttacGCCACCCAGATTTGTGTGTGAGAAAGGCTGAAGGAGTTTCTGTAGCCCGCGCTGAAGGTATGTCCCGTGAAAAAGTCTTGGCTTATTTTCAACTACTACATGAAATTCTAGAAGGAAACAACTTATTCGAGTTACCGGGATCCATATGGAATTTGGACGAATCTGGTCTACAGCGTAATAATAAAGTGGGTTATGTTATAGCCCAAAAAGGATCAAAAGATGTATCCACAATTACATCTGGAGAAAAGGGGGAAACCATAACGGTTATCGCATGTTGCAATGCAGAAGGCACTTTTCTACCCCCAGCTTGTGTGTTTAAAGGCAAGTACAAAAAAGATGAATTCCAAGATGGTATGCCCAACGGATCAAAAATTTACATGAACCAGAAGTCGGCGTATGTGAACTcagatatttttctgttgtGGTTGAAAGATCATTTTCTGCCAAGAAAAGGTGTAGGAAAAGCACTGTTGATCGTCGATGGTCATACATCTCACTGCAGTGCCGAAGTATTAGAACTTGCGGAaagaaatgatattattttattgtgctTGCCTAGCCACACTACCCATTACCTTCAGCCTTTAGACCGTGGGGTGTTCAAATCATTAAAATCTGCGTTTAACAAAGCTTGTCACCTTTTTATGAAAACAAATCCAAGCAGAAAAATAACCAGATTGCAATTTGGCAAATTATTGGCCGAAGCATGGACTAAAGCAGCAACTAATGACAATGCAGTTTCTTCATTTAGAGCCACGGGAATTTTTCCGTATAACCCTGAAGCTGTACCAGAACATGCCTATCATGTTTCTGATGCTTCAGCAACTTTTGCAATAGGTGCTCGGCCTATTGAAGATAATGCAATAGGTTCTAATTGTCGATTACCAGAGTCTGAGTCCAATCAATCTTCAGCACTTCAATGTCGATCTTCTAGTCCTCAAGCTAGTTCCTCTTCAGTACCTGATCGTCGATCTAAGGAGCCTCGACCTGGTCCATCTTCAGCGCCTGATCTTCAATCTCCTGATCCTCGACCTGGTTCACCATTAGTTCCTCATCAACAGTCACCAAAAATTAGACATTGCTCATCCTCATCATCTGGTCAACCTCCATCTGCTGGAAAAATTCTGGATAATATCTCACCCTTACCTATAATTCCTTTAGCATTAAAAAAGCGAGGTAGAAATGTTGCAACAATATTAACTTCACCAGAAAATATAGAGAAGGCCAAATTATTAAAAGAAAGACTTGCAAAACGTAAAGGTGCAGCAAAAATCAAATCTGTTTTAAAACCAATTAAAAAAGCGAAGAAGACCAAGCCTGAATTGCCTTCCTCTGAGTCAGATGAAGATTTTGAATCCAAAGAAGACAGCGATAGCGACATCAACGAGGAATTTAATGAGAACGAATGTGTTGGATGTTTGGAAGACTACAACAGCACAACTCGTTCAGATGACTGGATCCGTTGCATTATAATTGCAATCGGTGGATGCACGAAAATTGCactaaatttgaaaatgagTGTGACTCATGTGGGAAGTTCAGCCGAAAATAattaa
- Protein Sequence
- MPTKYIRKPGSTRGSWSEVALQRAKTAVRNGMGINLASRTFNIPSRTLRRRVQNNDASKKPMGPTGSLGMANELKLVAHIKKLQKRGFAPTRDDLRTMAYEFAVELKLNHRFNHEEEKAGYDWLNLFLLRHPDLCVRKAEGVSVARAEGMSREKVLAYFQLLHEILEGNNLFELPGSIWNLDESGLQRNNKVGYVIAQKGSKDVSTITSGEKGETITVIACCNAEGTFLPPACVFKGKYKKDEFQDGMPNGSKIYMNQKSAYVNSDIFLLWLKDHFLPRKGVGKALLIVDGHTSHCSAEVLELAERNDIILLCLPSHTTHYLQPLDRGVFKSLKSAFNKACHLFMKTNPSRKITRLQFGKLLAEAWTKAATNDNAVSSFRATGIFPYNPEAVPEHAYHVSDASATFAIGARPIEDNAIGSNCRLPESESNQSSALQCRSSSPQASSSSVPDRRSKEPRPGPSSAPDLQSPDPRPGSPLVPHQQSPKIRHCSSSSSGQPPSAGKILDNISPLPIIPLALKKRGRNVATILTSPENIEKAKLLKERLAKRKGAAKIKSVLKPIKKAKKTKPELPSSESDEDFESKEDSDSDINEEFNENECVGCLEDYNSTTRSDDWIRCIIIAIGGCTKIALNLKMSVTHVGSSAENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735409; iTF_00910449; iTF_00910450; iTF_00910451; iTF_00415892; iTF_01105516; iTF_00415886; iTF_01105518; iTF_00910448; iTF_00415890; iTF_00735412;
- 90% Identity
- iTF_00910449; iTF_00910450; iTF_00910451; iTF_00415892; iTF_01105551; iTF_00910448; iTF_00735409; iTF_00735412;
- 80% Identity
- -