Cimp060229.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010004338.1:613209-613679[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 3.5e-06 28.8 0.0 2 40 22 60 21 64 0.87
Sequence Information
- Coding Sequence
- ATGACCCGAACTTATAGAACTTATAAAAAAAAGCTTGGGCCGAGAAGTTATAAAAACTACTCTGACGAGAACGTAGAACGTGCCCTTGAAAAAATTGTGGATCATGGATGGGGCATACGAAAAGCatcaaaagaatataaaattccATATGGAACTCTCAAGAACCGGTATCATGGACGACGTGTTGGTAAAAATGGTGGCCAGTCTGTTTTTTCTACAACGGAAGAGAAATCTTTCATTAGGGCTATTTACACGTGTGGGGAATGGGGATTCCCTTTGACACTATTAGATGTTAGGCAACTTGCCAAAAACTATCTAGACAGTGCGGGTCGCACtgtagaaaaatttcaaaataatttaccaGGAAGAGATTGGGCCTATTCTCTCCTGCGTAGATATAAAGATGATGTGTCCCATAAATTGGCAGTGAACATCAAACGTACCTTTATGTGTTttctgtgttttgtttaa
- Protein Sequence
- MTRTYRTYKKKLGPRSYKNYSDENVERALEKIVDHGWGIRKASKEYKIPYGTLKNRYHGRRVGKNGGQSVFSTTEEKSFIRAIYTCGEWGFPLTLLDVRQLAKNYLDSAGRTVEKFQNNLPGRDWAYSLLRRYKDDVSHKLAVNIKRTFMCFLCFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416201;
- 90% Identity
- iTF_00416187;
- 80% Identity
- -