Basic Information

Gene Symbol
-
Assembly
GCA_030704885.1
Location
JARQZK010005346.1:2420-4340[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-08 3.3e-06 28.9 0.1 2 40 38 76 37 81 0.88

Sequence Information

Coding Sequence
ATGATGGCCCGAGGCCAGTATTCCTATGATGGCCCCAAGGCTATCATAGGAATATACACGGGGGCCATCATAGGATTACATAATAAGTCAAAAAATAGGCAGCAGTGGGCTGAAGGAAACATGACTGAAGCCCTGGAGGcattagaaaataaaacaatggGCTATACAACAGCAGCAAAAACATATAAAGTACCTCGAACGACATTGCGTAGGAGGTATAAAAATAAGCAGGGCAGTACCAAAGGATATTTAGGTGGACATAAACCTACATTTAATGTTGATAGTGAAGCTGAAATTGCCAAGCATGTAGTTAATTTAGAAACCAGGCTATTTGGACTTACAAGTACAGAGTTAAGAAAGCTTGTTTATCAAATAGCAGAGAAGCATAAGATTAGCCATCGATTCAATAAAGATAGAGGCATGGCTGGTAGAAAGTGGCTAAAAGGGTTTCTGGCAAGGAACCCAAGGATAACTGTTAGAACTCCTGAACAGACATCTATCGCAAGAGCCCAGGCTTTTAGTAAAGAAAATATTAGGTTGTTTTTTCGTTCCATTGGAGAAGTTATGGATAAATATAAATTTCCGCCTGAAAATATCTATAATGTGGACGAGACTGGCATGAGCACAGTTCCTACGAAGTCTACCAAAATTCTCGCAACAAAAGGAAGAAAACAGATTGGAATTATAAGCAGTGCGGAACGTGGACAAAATTATACCGCTGTGTGTTGTATGAACGCTATAGGAACATTTGTTCCCCCCGCCTTTATTTTTCCGCGGAAAAGATTCAAAGCCGAGTTAATGGATGACGCACCTGTACGCAGTGTAGCATTTTGCCAGGATAATGGCTGGATGAACACAGATACATTTGTGAAGTGGCTACAGCACTTTGTCTTGCACGTTAAACCATCGAACGAAAATAAAGTCCTTTTAATTCTTGATGGGCATAGTAGCCACAAGGGATTGGAAGTATTGGAATATGGTAAGGAAAATGGAATTATACTATTTTGTCTTCCAGCCCATTGTACCCATCGTGTCCAACCCCTTGACGTTGGCTTTTTTGCTCCGCTTCAAAATTTCTACAATTTGGAAATACAAAAATGGATGAGAGATAATCCTGGGCGAACTGTCACTCATTTTCAAGTGacaaaacttttcaataatgCTTACCTTAAAGCTGCGACTCCATCGAACGCAATAAGCTCGTTTAAAAAAACCggaattcatccgtttaacccagaTGTGTTTGAAGAGTGGGAATTTGCAGCATCTTATACAACAAATAGGGAAATCACAAACGAAGAACAACCGCAAAGTGAAATTGAGCATGAAACACAGAATGAAACCCAGCATGAGATCCAGAATGAAACCCAGCATGAAACCCAGAATGAGACCCAGAATGAGACCCAGCATGAAACACAGAATGAAATCCAGCAGGCTTACCAGGCGACTGACCAAATTGCAAGCACCTCTATAAGCAGAgagcaaattgaagaaatatccCCTCTCCCGAAAGTGACAACACAATTATCAAcccaaagaaaaagaaaacgtGGTAAGACAGGTGTAATTAATAGCACACcagatattgaagaaataaaagagATCAAAAAAGAAGCACTCGAACGAGAAAGAAGAAAAACAGCAAAAGCAGCCAgaagaaaagttgaaaaacagTTAAAAGAAGATAGTGATGAGGAAGTGATGAGTGGTAGTGATGAATCAGATGCAGCTTGTCTTTACTGCAACGAGCTCTATTCTCGTTCTCGTCCCAAAGAATTTTGGCTTAGGTGCCAGAACTGCAACGGTTGGTGTCACTCGGAGTGCGCTGATGCTCCTAGATCAACAAAGACTTTTTTTTGTGATGTGTGTCAGCCACAAAGgtgtttttaa
Protein Sequence
MMARGQYSYDGPKAIIGIYTGAIIGLHNKSKNRQQWAEGNMTEALEALENKTMGYTTAAKTYKVPRTTLRRRYKNKQGSTKGYLGGHKPTFNVDSEAEIAKHVVNLETRLFGLTSTELRKLVYQIAEKHKISHRFNKDRGMAGRKWLKGFLARNPRITVRTPEQTSIARAQAFSKENIRLFFRSIGEVMDKYKFPPENIYNVDETGMSTVPTKSTKILATKGRKQIGIISSAERGQNYTAVCCMNAIGTFVPPAFIFPRKRFKAELMDDAPVRSVAFCQDNGWMNTDTFVKWLQHFVLHVKPSNENKVLLILDGHSSHKGLEVLEYGKENGIILFCLPAHCTHRVQPLDVGFFAPLQNFYNLEIQKWMRDNPGRTVTHFQVTKLFNNAYLKAATPSNAISSFKKTGIHPFNPDVFEEWEFAASYTTNREITNEEQPQSEIEHETQNETQHEIQNETQHETQNETQNETQHETQNEIQQAYQATDQIASTSISREQIEEISPLPKVTTQLSTQRKRKRGKTGVINSTPDIEEIKEIKKEALERERRKTAKAARRKVEKQLKEDSDEEVMSGSDESDAACLYCNELYSRSRPKEFWLRCQNCNGWCHSECADAPRSTKTFFCDVCQPQRCF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-