Cimp053301.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010003648.1:110807-111583[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 1.4e-06 30.1 0.0 3 38 17 52 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGCCGAAAAGTAACACATGTCGAGATTGGAAAAACTTCGGCGGAAACTATGGGCAATGCAATTCGCGATATAATGAATGGTGTATTATCAGTTAAAGCTGCAGCTATCAGGTACATCATTCCACGTACTACACTTAGGCGTTATATTAAGAAATGCAACGatcaagaagaagaaattgaCTGGAACTCACCAATTTTGGAAGGAGTACCAAGGCAAACTCCAAATTACCGTGTCAatcagatattttctctcgaagaAGAGGACGTTCTAAGCGATTATTTCCAAACTATGGCAAAGTTGCATCATGGTATGAATCCTAAATGCGCGCGAAAGTTAGCATACGACTTAGCAATGgccaatgataaaaaaataccCGCTTCTTGGAGAGAAAATTGTACTGCTGGAAGATTATGGTTTAACGGCTTCATGAAAAGGagaaatgatttgtccataAGACTAGCAGAAGCCACATCTTTGGGTAGAGCCATGGGTTTTAATAAACCAGTCGTAGAAcagttttttaataatctaCGTCAAATTTATGAAAAGTATAACCTGGGACCCGAGCAGGTCTATAATGTTGATGAAACAGCCCTCACTACCGTTCAACAGACAGGGAAAGTTCTCGCAAGAGAGGGGCAAAAGCAGGTTAGCCACATCACATCAAGCGAACGAGGTACATTAGTTACCATGTGTGGCTGTATTAATGCCATTGGTAATAATATACCGGCACTGGGTGCTTCTTCACGTATCCCGATTTTCCTGATTTAG
- Protein Sequence
- MPRRKVTHVEIGKTSAETMGNAIRDIMNGVLSVKAAAIRYIIPRTTLRRYIKKCNDQEEEIDWNSPILEGVPRQTPNYRVNQIFSLEEEDVLSDYFQTMAKLHHGMNPKCARKLAYDLAMANDKKIPASWRENCTAGRLWFNGFMKRRNDLSIRLAEATSLGRAMGFNKPVVEQFFNNLRQIYEKYNLGPEQVYNVDETALTTVQQTGKVLAREGQKQVSHITSSERGTLVTMCGCINAIGNNIPALGASSRIPIFLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00977453;
- 90% Identity
- iTF_00416032;
- 80% Identity
- -