Cimp041674.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002912.1:166601-170848[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9 1e+03 1.7 0.0 14 32 18 35 10 37 0.89 2 2 2.1e-08 2.4e-06 29.3 0.2 4 41 194 231 192 233 0.91
Sequence Information
- Coding Sequence
- ATGCCTGCAATTACGCATTTTAATAAATGTCGAATATTAATCCATCATGAAAATGGAATGTCCAATAGACGCATTTCCAAACTGCTACAAATTCCTAGAACCACCGTCAACTGGATAGTTGGGAAATGGAGGGAAGAAAATATAGTGGAACGAAGACCGGGGTCTGGGCGACGTCGAATCTTCACTTTGGAAGAAGATGAAGCCCTGGTAAATGTAGTGCAAAATCCGCCTTTCAGCACTGCTGTTGAGGCcgtctacaattcaaattttcctGGTTCGGTATGGACAGCACGCCGACGCTTAAGATCAAGTGGATTGAAAAATCACAGTGCGGCCAGGAAAATTCGTCAAACGCCCTATCATAGGGAAAGAAGGGTTGGATTTGCACTAGAGCATCTCGCCGACGATGAGGCTTTCTGGAGCAGAGTAATTTTTTCCGATGAAAAAGTGTTCCAGTCGTCGCGCAATGGTCGGTTGAGAGTATACAGACCACCGAACACTCGTTATGTTGATCAATACGTCCAAGCTACAGACCAAAGCGGCCGTTTTTCTGTAAACATGTGGGCATGGATTTCGGCGCAATTAGAACAAGCGTTAGCAGCCATAAGAGGAGGGATGTCTCAAGCCCAGGCGAGTCGCCGATTCAAAATGTCCCGTGGAACCCTCCAAAATAAGTTGGTTGGAAGGCACACCAAGACAATAGGCCATCCGATTGTATTTACCCAAGAGGAAGAGCAGTTACTGAAACACACTCTGACGACTGAGGGCAATTGGGGCTTTCCATTAAAAAAGACTGGTCAAAATATACAAGACCTGATTGGATTGCATGTGCACAATCATTGGGTTTGTGGTATTTGTAAGGAGGGAAGCATGGATCGCTATTACGCTTGCTCAAATTGCGAGGAAATGGATTTTGACAGTGACGACTCCATAAAAGATAGACATTATAATCCCTCAGAATAA
- Protein Sequence
- MPAITHFNKCRILIHHENGMSNRRISKLLQIPRTTVNWIVGKWREENIVERRPGSGRRRIFTLEEDEALVNVVQNPPFSTAVEAVYNSNFPGSVWTARRRLRSSGLKNHSAARKIRQTPYHRERRVGFALEHLADDEAFWSRVIFSDEKVFQSSRNGRLRVYRPPNTRYVDQYVQATDQSGRFSVNMWAWISAQLEQALAAIRGGMSQAQASRRFKMSRGTLQNKLVGRHTKTIGHPIVFTQEEEQLLKHTLTTEGNWGFPLKKTGQNIQDLIGLHVHNHWVCGICKEGSMDRYYACSNCEEMDFDSDDSIKDRHYNPSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -