Cimp023782.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010001500.1:342651-343031[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-10 3.5e-08 35.2 0.1 4 45 25 65 22 65 0.95
Sequence Information
- Coding Sequence
- ATGAGCATTTGTTTTACAGTTTTCAAAAGGGGCAAGACGAGTAGGAATTTGCGCAAACAATGGGATCAAAGTAATTTAGAGGCTGCTCTAGACGCTGTTCGAGCTGGCGAGAGTCAAAGAAATGCTAGTGCAAGATTCGAAATTCCACGACGTACTTTGAGAAGATATATTCAGAATGGCCTTTCCACAAAACGCTTAGGGAGTCCTAGTGTATTAACTCCAGAGCAGGAAAATGATTTTGTTAATAGAATCATTCGATTTTGTGATATTGGATTACCTCTTACGCCAATATTAGTACGGCACCAAGCATTTAGGtattatgaaattaataagataAAGCACAAGTTTAACAAAACTAAAGAGTGCGCTGGAAAATCGTGA
- Protein Sequence
- MSICFTVFKRGKTSRNLRKQWDQSNLEAALDAVRAGESQRNASARFEIPRRTLRRYIQNGLSTKRLGSPSVLTPEQENDFVNRIIRFCDIGLPLTPILVRHQAFRYYEINKIKHKFNKTKECAGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416040;
- 90% Identity
- iTF_00416040; iTF_00415986;
- 80% Identity
- -