Cimp050677.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010003618.1:1015806-1016590[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-05 0.0047 18.8 0.0 2 35 6 40 5 45 0.90 2 2 0.00043 0.05 15.5 0.0 9 35 119 146 118 153 0.86
Sequence Information
- Coding Sequence
- ATGTATAAATACGATAAAGAGCAACTTAAAAACGCTGTAAAGGCAGTGAGAGAACATGGAATGCCTGTGGCAACTGACAGCAAAACTTATAATATTCCAAGGACCACTCTAAGGCATAAATTGGCCGGACGAGCCGCTGAAGGTATAGGAAAACGGGGACCAGATTGTTTGTTAGGGTGCGACCTAGAAGAGCTGTTGTGTGAGTGGCTGAAAAATTGTGCGAAAGCGGGATTTCCCGTACACAAAGGCGGCCTCCTCTTTTCTGTACAGAAACTTTCCGCAGAACTTTTCACTGAGATTGGCGAAGAGAGCCCATATGTTAAGCTCCCCGGAAAAACGTGGGCAACAGTGTCTGTAAAGGCAGTGAGAGAACATGGAATACCTGTGGCAACTGCCAGCAAAACCTATAATATTCCAAGGACCACTCTAAGGCATAAATTGGCCGGACGAGCCCCTGAAGGTATAGGAAAACGGGGACCAGATTGTTTGTTAGGGTGCGACCTAGAAGAGCTGTTGTGTGAGTGGCTGAAAAATTGTGCGAAAGCGGGATTTCCCGTACACAAAGGCGGCCTCCTCTTTTCTGTACAGAAACTTTCCGCAGAACTTTTCACTGAGATTGGCGAAGAGAGCCCATATGTTGTGCTCCCCGGAAAAACGTGGTACAGGAACTTCATGAACATACACCCAGAGCTGTCCTATAAACAACCGAATATCTGA
- Protein Sequence
- MYKYDKEQLKNAVKAVREHGMPVATDSKTYNIPRTTLRHKLAGRAAEGIGKRGPDCLLGCDLEELLCEWLKNCAKAGFPVHKGGLLFSVQKLSAELFTEIGEESPYVKLPGKTWATVSVKAVREHGIPVATASKTYNIPRTTLRHKLAGRAPEGIGKRGPDCLLGCDLEELLCEWLKNCAKAGFPVHKGGLLFSVQKLSAELFTEIGEESPYVVLPGKTWYRNFMNIHPELSYKQPNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -