Cimp028979.2
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010001983.1:4542-5392[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-11 7.5e-09 37.3 0.0 4 36 18 50 15 52 0.94
Sequence Information
- Coding Sequence
- aTGGTTAGAAATTATGTTCGGAAGACAAAGCGTCAGGATTGGAGTACCGAATTCATGAACGCAGCAGTTGATGCCGTTGTCACTGAACAAATGGGGTACAGGAGAGCCGCAGAACAACATGGTGTGCCCCAAACTACTTTAGAAAGGGTTGCGGTGTCACAATTTTTTCGCCTTCTTTTGGAAACAGTAGACACATATAAACTGGTAGGTGAACGCATCTATAACTGTGACGAAACGGGGTTGACTGTGAATCCAAAGGGCCACACCAAAATTTTAGCCTTAAAAGGAAAACGTCAGGTAGGCACCTTAACTTCCGCCGAACGAGGAGAAACCATAACGGCTGAAATCTGTTTTTCTGCTGCTGAAGCATACATGCCACCTATGCTAATTTTTCCAAGAAAACGGAAGCAACAGTCATTCGAGTTAGGATTGCCACCTGGTTCAGTAGTAGAAGTTAGTGATTCTGGATGGATAACCACTGAACTTTTTTTTGATTGGTTTAAGCTATTTGTTGCGTTTTCTAAAGCAAGAAAGTAA
- Protein Sequence
- MVRNYVRKTKRQDWSTEFMNAAVDAVVTEQMGYRRAAEQHGVPQTTLERVAVSQFFRLLLETVDTYKLVGERIYNCDETGLTVNPKGHTKILALKGKRQVGTLTSAERGETITAEICFSAAEAYMPPMLIFPRKRKQQSFELGLPPGSVVEVSDSGWITTELFFDWFKLFVAFSKARK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -