Cimp070849.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010005063.1:799114-801443[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-12 8e-10 40.5 0.0 1 40 43 83 43 87 0.92
Sequence Information
- Coding Sequence
- ATGGTCAGGCAAACCGGTGTAACATGGAACGTGAGCATCCAAGAAATGACACCGTACCTAAGACAACGTACAAGAGAATATCCCCAAATGAGaacatataaaagaaaaaaggaACGCCAAGGTTGGACGAACGAGTCTATGCAGGATGTCATTGAAGCAGTTATCTCTGGAATAATGGGGTACCAGAAAGCTGCTGATTCGTTTGGTGTGCCTCGATCTACGTTGGTGGATAGAGTAAAAAAGCAAAAATCTGGTGCTTCAGTCGAGGCTGCTGCAAGAAAAGgaatTGGTCATTTTAAGTGTGTCTTTACAAAGGAACAAGAAGACGAGTTGGTAGCATATGTCAAAGATATGGAACTGCGACTTTTTGGCTTAACAACGACAGAATTAAGACGACTGACTTATCAGTTAGCCACAAGAAACAAATTGCAACATCCAGATTTGTCATTAAGGAAACCAGAGGCAACTTCTGCTGTAAGAGCCATGGGGTTTAATGAAGTTTCTGTtggtaaatttttcgatttgttaGAACGTCTTATGGATCGATATAAATTTCAAGCGAGTAACATTTACAATGTTGATGAAGTTGGACTTACCACCGTACCGAAAACCCAATCAAAGGTTATTGCCTTAAAAGGCAAAAGGCAAGTAGGCACCCTAACTTCAGCTGAAAGGGGTCAGTTAGTGACAGTAAAGCTGTGCATGTCTGCTGCAGGGCACTATATTCCTCCGCTTCTTGTGTTCCCAAGAGTCAGAATGAAGGGCGAACTTTTAACTGGAGCTCCACATGGAACAATCGCAGCATGCCAACTAAATGGATGGATGCAAACAGAAATTTTTGTCCAATGGCTAGAACATTTAGTCGAATATGCGGTTTTGCCCCCGATGACATCCGCTTTTGCCCCATGGCATGGGGCACAACCGGATTTTGCATACTTTATgttaattttctaa
- Protein Sequence
- MVRQTGVTWNVSIQEMTPYLRQRTREYPQMRTYKRKKERQGWTNESMQDVIEAVISGIMGYQKAADSFGVPRSTLVDRVKKQKSGASVEAAARKGIGHFKCVFTKEQEDELVAYVKDMELRLFGLTTTELRRLTYQLATRNKLQHPDLSLRKPEATSAVRAMGFNEVSVGKFFDLLERLMDRYKFQASNIYNVDEVGLTTVPKTQSKVIALKGKRQVGTLTSAERGQLVTVKLCMSAAGHYIPPLLVFPRVRMKGELLTGAPHGTIAACQLNGWMQTEIFVQWLEHLVEYAVLPPMTSAFAPWHGAQPDFAYFMLIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415849; iTF_00416264; iTF_00415823; iTF_00416365; iTF_00415830; iTF_00415800; iTF_00415872;
- 90% Identity
- -
- 80% Identity
- -