Cang004360.1
Basic Information
- Insect
- Cynaeus angustus
- Gene Symbol
- -
- Assembly
- GCA_030157275.1
- Location
- CM058059.1:18920045-18925449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00041 0.034 14.9 0.2 1 23 15 38 15 38 0.96 2 15 0.025 2.1 9.3 0.7 1 23 73 96 73 96 0.94 3 15 7.4e-05 0.006 17.3 3.4 1 23 101 123 101 123 0.98 4 15 0.11 8.6 7.4 2.5 5 23 266 285 263 285 0.95 5 15 8.7 7.1e+02 1.3 0.1 2 23 292 314 291 314 0.83 6 15 0.00041 0.033 14.9 1.3 3 23 354 374 353 374 0.95 7 15 1.9 1.5e+02 3.4 8.5 1 23 379 402 379 402 0.96 8 15 0.012 1 10.3 0.5 1 23 408 431 408 431 0.95 9 15 2.3e-05 0.0019 18.9 0.2 1 23 437 460 437 460 0.98 10 15 0.77 62 4.6 9.5 1 23 465 487 465 487 0.97 11 15 8.4e-05 0.0068 17.1 0.1 2 23 497 518 497 518 0.96 12 15 0.07 5.7 7.9 0.5 3 23 528 545 527 545 0.84 13 15 1.9e-08 1.5e-06 28.6 0.6 1 23 551 573 551 573 0.98 14 15 2.9e-05 0.0024 18.6 0.8 1 23 579 601 579 601 0.98 15 15 1.1e-05 0.00089 19.9 3.3 1 19 607 625 607 628 0.94
Sequence Information
- Coding Sequence
- atgaaataccaGCAACATATTAGATACCACAAGTCCAAACGTTTTCCTTGTGGTGCTTGCAGTAACACTTTTTATTCCGCTTCTAATCTCAAACTTCATATCAATAGAGTCCATGAAAAGAATCGAACGATTTCTTGTGATTTGTGCGCCTATCAGGGATGCACCACCGTTGATGTTCAAATCCACACGATCAATGTCCACACTAAAGAATATCCACACAAGTGTGGCACTTGTAATAAAGGATTTTTATCTAAAGCAGAGCTAGTTTTACACAAAGAATCAATTCATGAAGGAGTTCGATTTGTATGTAGAATTTGCAAGAGGATTTTTAAAGATAAGTATTACTTCAATCAACACGTCAAGAAACATTCTATGGAAAACAAACACATAATTTCAAGTGGAGAGGTATTAGAAGATCTTCAACGCGTCCATAAAGGACCAAAGAAAAAACGAGAATGGGTAAAAGTGCGCGAGTTTGACTCAGCTCAAGAAGCCGAAAGCTTTATCAAAATCGAAACCATGtggaaaaagtgttcaattaaaaaatcagtCGGAGGTCCTAAGGTTGAATATCGTTGTGTTTATGGAAAATACCGGAAGCAAGAATGTCCTGCCAGGATCTACCTAATGTACCATACAACAAGTCCGAAAGTTACGATGTTTTCTACCGTACAGGAACATAGCAATCATAGAGATTCTATGTCTGGTTTAGAGAAGGATATCAAAGGTTTTTCTTCGTATTATAACTGGAATCTGCAGAATAAGCCTTGTGTCGCCTCATCTACTGCTCaagtCCATTGCGGTCAGTCTTTTCATTCCACTACTGGTCTTAAACACCATGTTAGCAGAGTCCACGAAAAGAAACGAGATGTTTCTTGCAGTTTTTGCGATTATAAAGGTTACAGCAAAGCAGTTGTACGAATCCATACGATTCAGATTCATACTAAAGAATATCCACACAAgacTTCTGCCGTTCAGTCCATCCTCGAGACCATTCTAAAGCAACCTAAAAGCGTTTGTAAATCTACTCCAGAATTgtcTAACAAATACGAAAATATCTGTGAAAAGTGTTCGAaatcttttcccacaagaaaaaaatatatcaggCATCTTTACCTTCACAAACCAAAACGATTTCACTGTGAAATCTGTGGTCATGCATCTTTTTCAGCGTGTGCCTTAAAAATTCATCACCGTCATCGCCATGAAAAGAAACGGAATTATTCTTGTAACTTGTGCAATTACAAAGGATTTTTTCCTGCTAACGTGAAAGCACATATGAAAAACATGCATCTCAAACAACATCGGTATAAATGTGACGTTTGCAACAAAGGATTTGATAGTCCAAAAAGCTTAGACGCACATAAACTGACAGTTCACGAAGGCGTCCGTTTTTGTtgtgaaatttgcaaaaagttttataaatgtggCGATCATTTTATAAGACACATGCAGAAACATTCTCCAGAATACGCTAAAAATAATCGTGTTTGCGAACTTTGTTCCAAAGTTTTCGCAGATGAGAGAGACTTGAAAGCGCACGTGAAGAATCACGTTAGATTGAGCGATCCAGGGGAGATGTGTGAAATTTgtggaaaaatttacaaaaacttagCGCTTCATTTGAAGAGGCACAAGGATGAGAAAGATTATGTGTGTGATTATTGTGGTAAAGCTTTCTCATCtcgcaataatttaaaacttcatttACGGATACACACCGGAGAGAAACCATATAAATGTGAATTCTGCGAAAAGTCGTTTACTCAAAGACCTCCTTTAAAGATTCATGAGAGACTTCATACAGGAGAAAGACCTTATAGctgtgaaatttgtaaaaaatcgttTGTTTCGAAAAGTAATTTGAAGCAACACAACTGTAAGGGTTATCCAAGTAATTAA
- Protein Sequence
- MKYQQHIRYHKSKRFPCGACSNTFYSASNLKLHINRVHEKNRTISCDLCAYQGCTTVDVQIHTINVHTKEYPHKCGTCNKGFLSKAELVLHKESIHEGVRFVCRICKRIFKDKYYFNQHVKKHSMENKHIISSGEVLEDLQRVHKGPKKKREWVKVREFDSAQEAESFIKIETMWKKCSIKKSVGGPKVEYRCVYGKYRKQECPARIYLMYHTTSPKVTMFSTVQEHSNHRDSMSGLEKDIKGFSSYYNWNLQNKPCVASSTAQVHCGQSFHSTTGLKHHVSRVHEKKRDVSCSFCDYKGYSKAVVRIHTIQIHTKEYPHKTSAVQSILETILKQPKSVCKSTPELSNKYENICEKCSKSFPTRKKYIRHLYLHKPKRFHCEICGHASFSACALKIHHRHRHEKKRNYSCNLCNYKGFFPANVKAHMKNMHLKQHRYKCDVCNKGFDSPKSLDAHKLTVHEGVRFCCEICKKFYKCGDHFIRHMQKHSPEYAKNNRVCELCSKVFADERDLKAHVKNHVRLSDPGEMCEICGKIYKNLALHLKRHKDEKDYVCDYCGKAFSSRNNLKLHLRIHTGEKPYKCEFCEKSFTQRPPLKIHERLHTGERPYSCEICKKSFVSKSNLKQHNCKGYPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -