Cang004363.1
Basic Information
- Insect
- Cynaeus angustus
- Gene Symbol
- -
- Assembly
- GCA_030157275.1
- Location
- CM058059.1:18930568-18931722[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.1 13.4 0.1 3 21 19 37 18 40 0.89 2 13 0.0077 0.63 10.9 5.4 1 23 45 68 45 68 0.91 3 13 5.2e-05 0.0042 17.8 2.3 1 23 74 96 74 96 0.97 4 13 7.4e-05 0.006 17.3 1.1 2 23 103 124 102 124 0.96 5 13 0.00042 0.034 14.9 3.5 2 23 130 151 129 151 0.97 6 13 0.0049 0.4 11.6 0.4 1 23 160 183 160 183 0.97 7 13 0.00084 0.069 14.0 2.2 1 23 190 212 190 212 0.96 8 13 5.8e-06 0.00048 20.7 1.1 1 23 218 240 218 240 0.98 9 13 1.2e-06 0.0001 22.9 2.0 1 23 246 269 246 269 0.96 10 13 1.8e-05 0.0015 19.2 0.3 3 23 276 296 274 296 0.96 11 13 4.8e-06 0.00039 21.0 3.9 1 23 302 324 302 324 0.97 12 13 3.3e-05 0.0027 18.4 0.5 1 23 330 353 330 353 0.95 13 13 4.2e-06 0.00034 21.2 2.8 1 23 359 381 359 381 0.97
Sequence Information
- Coding Sequence
- ATGGGAGCTCACATTAAAGTGGAGGCATTCGAAATCCAAATCCGACGCATATTATGCGAAATCTGCAAAGAAGCATTTCCCAACAGCATATCTCTCCGTCGCCACAACACCGAAGCTCACCGTTTAGGAAAATTCGTTTGTATCATCTGCAAGAAACATTTCCAACACCGCTCTAGTCTTCAAAAACACAGAGAACAACAACACAGCCGTGGACTTCTCTACTTTTGTAACGTTTGCCAGAAATACCTAAAAACTTCCGATCAGTTGCGACAACATCAACGTGATCACGCTAATCCTGATGGTATAACGTGTCCGGAATGTGGACGCAAGTTTCTTTTCAGTTCTTCGTTTCGTAAACACATGTCTTTGCATAGAACTGGTCCGTTGAAGTGCGAGTTGTGTTCCACGACCTTTAGAGATCGTTCAAAGTTGAAGTTTCACATGAAGAAACACGAAGACAACTATGTTGCTCCAACTTTCACATGCGAATTTTGCGAGAAGGTGTATTTAGTTGAACAGAACTTGCAGCTTCACATTAAAAAAGTACACAGAGGTGAAACAGAGTCGCATGTTTGTGAAACGTGTGGAAAGTCAATGGCGTCGAAGCAGAGTTTGATCCACCATCAATATATTCATTTGGGGCAGAAACCGTTCGCTTGCCATTTGTGTGAAAAGAGTTTTGCTAAGCCGGGACGCTTGACTGACCATCTTAGGACACACAACAACGAAACACCTTTTAAGTGTGAATTCTGTGATAAGAGTTTTAGTATGAAGAAGACGCTAAGGTCGCACATGATGGCTCTTCATGAAGGGAAGAAACACTTGTGTGCTATTTGTGGAAAAGCGTTGTCTACTGCGGAAAGTTTGAAAGTACACACTAGAATGCACACTGGGGAAAAGCCGTTTGCGTGTCACTACTGTGAGAAGAGTTTTGCTAAGAAAGAACACATGACAGTGCACTTGAGGGTGCACACGAAGGAAAAACCACACGTGTGCAAAATTTGCGGGAAGAGTTACACTCAAGGGACTTCTTTATCTTTGCATGTTAGGGCCGTGCATGAAAGAGACACTCCTCACGAGTGCCAAATTTGCTCTAAGAGCTTTGTTACGAGAAGTTTACTGAATTTGCACTATAAGTCGCATAAGGGGGTATAG
- Protein Sequence
- MGAHIKVEAFEIQIRRILCEICKEAFPNSISLRRHNTEAHRLGKFVCIICKKHFQHRSSLQKHREQQHSRGLLYFCNVCQKYLKTSDQLRQHQRDHANPDGITCPECGRKFLFSSSFRKHMSLHRTGPLKCELCSTTFRDRSKLKFHMKKHEDNYVAPTFTCEFCEKVYLVEQNLQLHIKKVHRGETESHVCETCGKSMASKQSLIHHQYIHLGQKPFACHLCEKSFAKPGRLTDHLRTHNNETPFKCEFCDKSFSMKKTLRSHMMALHEGKKHLCAICGKALSTAESLKVHTRMHTGEKPFACHYCEKSFAKKEHMTVHLRVHTKEKPHVCKICGKSYTQGTSLSLHVRAVHERDTPHECQICSKSFVTRSLLNLHYKSHKGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -