Cang017690.1
Basic Information
- Insect
- Cynaeus angustus
- Gene Symbol
- -
- Assembly
- GCA_030157275.1
- Location
- CM058066.1:4802796-4803846[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.9 6.8e+03 -2.8 0.1 19 25 1 7 1 7 0.85 2 3 1.5 2.6e+03 -1.5 0.0 31 38 35 43 34 47 0.81 3 3 3.4e-10 5.8e-07 29.4 0.2 2 43 102 143 101 145 0.89
Sequence Information
- Coding Sequence
- ATGAGACGAGCTGCCCGTATCTCACAAATCGACGATATAGATTGCACCTTACATCAATTGCAATTGTGTATACGTTCAGCTTTGGCGGAAAATGAACATTTCTCAACGCTGTTGGCTAAATGTAAACAGATTGCGACGCATTTCAATCATTCTATAACTGGACAAAAAGAACTCAACAACTTTCAAGAACGCCTGGGTTTACCTCAGCTGTCAGTTATTCAAGAATGTACTATTCGGTGGAACAGCATGTTTTATAAGatCATGGCACGCTATAAATCTAAAGGGATTAGAGGTAATTCGTCAGAAGCATCAATGAAACAAGCATTAACTGCAATCAAAAGCGGTAAGATGAAAGTGTATACGGCTGCAAATCACTATAATGTGCCAAGACGTACTTTAATGCGTTATTTATTAGAGAAACAGGAGACAAAATCTACATTAGGTCGGAAACCGCTTCTTAACCCTGAACAAGAAAAGATTTTAGCATCCCGTATTATTCGCCTGTGCAACGTGGGATATCCATTGACACACCGTGTACTACGTAGAAGACATTCTGTGATCGAAATAACATTTCAGCGTCAGATGGAGACTCGATGGTGTGACGAGATTGGCTGA
- Protein Sequence
- MRRAARISQIDDIDCTLHQLQLCIRSALAENEHFSTLLAKCKQIATHFNHSITGQKELNNFQERLGLPQLSVIQECTIRWNSMFYKIMARYKSKGIRGNSSEASMKQALTAIKSGKMKVYTAANHYNVPRRTLMRYLLEKQETKSTLGRKPLLNPEQEKILASRIIRLCNVGYPLTHRVLRRRHSVIEITFQRQMETRWCDEIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -