Cang009609.1
Basic Information
- Insect
- Cynaeus angustus
- Gene Symbol
- -
- Assembly
- GCA_030157275.1
- Location
- CM058062.1:7243152-7256929[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-12 4.3e-09 36.2 0.0 1 41 111 151 111 155 0.94 2 2 0.99 1.7e+03 -0.9 0.0 29 42 322 335 320 338 0.81
Sequence Information
- Coding Sequence
- ATGAGGCTTCTTGGCTTCGGATTGGCGGGTGCTCGAAAATTCTGCGGCCTAATGGACATGCCGAAATTATTTTACCACTCCACCTACgatattattgtaaaaaacattGACGATTCTGTGAAGAAGAAGAGGAAGAGGTATTTCAAGTTTCAGAAGTCAGTAGAAAACGAAAAGCAGATCAAGACCAAATGGACGATCCTAAAATGTACTTCAGGTTATATCGAAATTATTGACTTAATGATTAATCAAATAGACATTAGGTTCAACGATCTAGGATCGTTAAATCTTCTAGATTTGTTGAACAAAAgGCCTCCCAAACGAGCATTGTGGTCTGAAGACGACTTGGTGGCGGCAGTCCGAGCAGTACAGTGTGGCCGGCTGAGCACGTACAAAGCTGCCGAAAGGTTCCAAGTGCCCAGAAGAACTATACGAAACCACCTCCAGAccggcaatttaaaaaaaaccttaGGTCGAAAACCTTTACTTAATGACGAACAGGAGGCAGAGCTTGTGAGCAGAATTGTGAGGTTTGCTGAAATCGGATTACCTGTTACACCAAAGATCCTCCGCCGAGCGACTGGTTTGTATCCATTTAATCCGCACGCTATTCCGGAAGTAGCATTTGCTCCATCTGTATTGACAGAGACACCAGCTCCTGTACCTAACGCTGCTGATGTAGAAAATAAGCCACCTCGCGTCTTATCCAGGTCAATGGCCCCCGAGACCCCCCAACCATCGACATCAATGCAAGAACAAAGAATTGATGAAACcccaaaaaaatcagaatggTTTACGTCAACCGATGATCCGTATCACGAAAACTGTCCACCCGGAGATGAGTCTTGGTGCTCTTGGCAACGCGTTTCCGCGAACGGAGAACTTGCCTCTTATCAACACGTGTATACAACTCTACCAGTCGATGTTTTAGAAGAAGAAGCGATAAAACCCATTTATACAGAACTTTCGAACGAAACCTTACTGGAAAGATGTAAAGGTGGTTATACCCAAAACAATAACGAAAGCTGCAATCAACTCATATGGAAAAGAAATCCGAAGATTTTACGGGGTGGGTCGATTGTAGTAAACATAGCTGCCCATGTAGCTGCTTGTATGTTCAACGAAGCATGTGCTTCACTTTTGTTAATGTTGCATGCAATGGAAGTAAGCTGCCGCCGAAATTGTCACGCGTTCGTGAGGGAAGAAGATGAAATGCGCGTGGACATGGCTAAGCGTTGCGCTCAAGCTAACACTCGTGCAGCAAGATTATCGCGAAGACAGCACCACATCGGAATTTTAAAGCCAGCTAGATATAACTCAGCCATGAATAATTGGATGCTAAGTAATCCAGGGCGAACTGTTACTATCTATAATATACCCGGATTTATAAGCACAATTATGTCGCAGGCTTTTAGCCAATCCAATATTTTGAGTGGATTTCGAAAAACTGGAATACATCCCTACAACCCGGACATTTTTCAAGATGAAGATTTTTTATGCTCTGCGGTAACTGATAGAGAAATGACTCGTCAACTTCAAGGGCAAGATGTTGTTTCGACCTCAGTAGCTCCAGAACTACCTCCAAATGTAACCAGAATCGAATCACCTTCAACATCTACTGTACACCGTCAGCCAGAGCCTTCGACATCAGCATCAGTATTCATGAATAGAACTCCGGCATTTAGAGCCAGTTCACCATCAATTTTGACTGAGGCGGAATCAGAGCATGCAATCGCAATATTAAGACAATCAGCGGAGGTAGCTTCTACATCTCAAGATCTGGATATGACAATGGAACTAAATCCCTTACTTTCCGTCCTTTCGAATACTCTTCAGAATTCTTCGGCACTGAAGGAACATTCCATTGACACCGCTGACTTGTCTTCGATTCACCAGTTTCAAAGTTAA
- Protein Sequence
- MRLLGFGLAGARKFCGLMDMPKLFYHSTYDIIVKNIDDSVKKKRKRYFKFQKSVENEKQIKTKWTILKCTSGYIEIIDLMINQIDIRFNDLGSLNLLDLLNKRPPKRALWSEDDLVAAVRAVQCGRLSTYKAAERFQVPRRTIRNHLQTGNLKKTLGRKPLLNDEQEAELVSRIVRFAEIGLPVTPKILRRATGLYPFNPHAIPEVAFAPSVLTETPAPVPNAADVENKPPRVLSRSMAPETPQPSTSMQEQRIDETPKKSEWFTSTDDPYHENCPPGDESWCSWQRVSANGELASYQHVYTTLPVDVLEEEAIKPIYTELSNETLLERCKGGYTQNNNESCNQLIWKRNPKILRGGSIVVNIAAHVAACMFNEACASLLLMLHAMEVSCRRNCHAFVREEDEMRVDMAKRCAQANTRAARLSRRQHHIGILKPARYNSAMNNWMLSNPGRTVTIYNIPGFISTIMSQAFSQSNILSGFRKTGIHPYNPDIFQDEDFLCSAVTDREMTRQLQGQDVVSTSVAPELPPNVTRIESPSTSTVHRQPEPSTSASVFMNRTPAFRASSPSILTEAESEHAIAILRQSAEVASTSQDLDMTMELNPLLSVLSNTLQNSSALKEHSIDTADLSSIHQFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -