Ccal041139.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012709.1:38486629-38493933[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.9 2e+03 1.0 0.4 3 21 999 1017 997 1018 0.85 2 10 0.38 76 5.5 0.1 2 20 1027 1045 1026 1047 0.92 3 10 0.11 21 7.2 0.1 2 23 1113 1134 1112 1134 0.96 4 10 0.064 13 7.9 2.5 3 22 1244 1263 1243 1263 0.97 5 10 0.6 1.2e+02 4.9 0.1 2 23 1280 1301 1279 1301 0.95 6 10 9 1.8e+03 1.2 0.1 1 11 1312 1322 1312 1328 0.84 7 10 0.0002 0.041 15.8 0.7 1 21 1378 1398 1378 1399 0.93 8 10 0.00019 0.037 15.9 1.3 2 23 1420 1442 1419 1442 0.96 9 10 0.033 6.6 8.8 3.2 1 23 1930 1952 1930 1952 0.97 10 10 0.021 4.1 9.5 0.1 2 20 2381 2399 2381 2400 0.95
Sequence Information
- Coding Sequence
- ATGCCATATGCtgaaaaaaatttcatcaaaaagaCTAAACCGAATAAGCGGAACTCATTTAAAGCTATGGGGGGCAGCAGAGGTACAACCGAAAGCGCAGAGCTTGAACCAGAGTCGTCAAAAAATAGTGAAAACCGTTCACCAGATGCAGATGGCACGGAACAAATTTTACGATCCGTGGCTGATGATGCCCATAAAAACAGGAATATTACCGAAGGGTACATTACATCGTCTATATCAGATGAAGATCAGTTGAAAATCTGCAGGACGATATCCGTTAAATTAATACGTTTACCTGAGGCCCTCGTAAATAAGTGTATGGTACTGTCTGATGTGAAagcaaaaaagaaaagaagtcaATATACGTGGAAACATGGCTTCGTTGACAAGCACAAAAGACAGAAATACTTGCGACAGAAGAGATCGCGGGCCCTTTTGGAAAAGTCTATATTAATGAAATCACTAAAATTTGACGGTGATCAGGAAGACCCGAATGACGCTGAAAAATTAGGGCCAGATGAGATCGTGAACGGTGAGATCCCCAATAAATTCGAATCAACTACGAATGAAGAATTGCCGAGCGATACATTCGAGTTATCGATAGAATCAACTGAAGGGAATGAAAACGAGATTCATAAATGTGTAGAATTTACTGAAATATGCGAAACCACTGTCGAAGAATGCGATACGTCGGAATCACCGGCGAGCGAATCAATCGAACCGACAGAAACTTATGCAGAGTCTCAACATCAACcggatgaaagaaattttactgAAATTCCACGTCAAATCGATACCTGTTTAGTTACGAAAATTTGTCAAGATTCAGCAAACGCGACGATTAATCCCACAAAAATATCGTCGCAATCTAGTCTTGTTGTATCTCCCGAACAAAATAACaatcaaaatcgtaaaatatgcTCACGAAGACTCCCAGAACCTACCAGTTCTATAACTATTGAACCTGTGGAAACGAGGAAAAGACTTCTCCAATATGATGATGACGAAACTGAAGAAACACAGAGACATCTCTTGAAAAAGCTCAAATCTGTAGATAGCGTGAATACGTTTGAGGGAGAAGCTATAGAAGAAGGGAGAAACACGAGCGAATCGAGTGAAAGTACTGCTCCTATCGCAAGGGAAATTACACTCAGCGAAATAAATCAGTGCGATCCAAAGTCTGTTCGCCGACGAACGAAACCGACCGGAAAGAACATCTTGAGAGAAGCCAGCGTTTGTCTTTTCCGGCTTGAGGATTCGCAGGATCCTTTAGTTCTAAATTGGAAATTAAAAACGACTTTGGAACTCTTAAGCGACATCACTGTAACCGCCTGTACAACTAGTCCAATCAATAATCATTTGGATTTCGAAGTATACTCGGAACCTGGGGCAGTAGTCGCCGGTGTGCCGATCACGAGCCTCGAAGATCCCTTAGAAACCTTAGATGCTAATAAAATACCCAATAGACCTCAGGACACTTCCACAGACTCACTATCCAAAGAAGACACTTCTTATTTATCACGTGGAGAAGAAAATACAACACTGACAGATAGCGATGAAACAGAGAGTAGCGAGGAAGACGAGGATGACGAAGAAATCGTGAGGTTCTTACGCACTCGGCGAAAAGTAAGACCTTCGGTCTATAGCTCGAGCTCCGCAAGCTCATCGAGTTGCCAAGAAATCACATCTCCTCGATTGTTACGCAGCAACACACTGTCGGTTAATTCATCCTCCGTGGAAAAAATATCTTACTGTAACGAGACGAGTGAAACGCCAGCGTTGCGTAGCCGTATAAGATTAATTTCGACCAATAGCTCGAGTTCCGAAGACACTCGCAATCACAAAGAAATTCCAAAGACTTCACCGCGTCGACACGAAGAAGCGATAAAAACTCCGGTGTTACTTAAAAGAATAAACAGAAAGCCGGCGAATCGTTTGACTTCTGATAGCGAATGCAGTCGCGAAGAGCTTCGAAAACCTCCGTTAAATCGTAGAAAACCATTCCGAGTTGTGATGAAAAAATCGGACTTTGAAAGTACGTTGAATAACAGCAAATGCTTGAACAGCTACTTCTCTAAAGATGAAGCATCCGTCTCCGCGTTAACTCATGCACGCTACAGCAGAGAAGAAGTATCAAACCAGAACGAAGACGACGCAGGAATAATGAATGAATGCGCAAACCGTTCCGTAGCCAGGACTTCGAATTTCGTGACGTGTGGTCATGATCAGGAAGACGACGTTTCGCTAGAAGCTCTCGCCGAAGTAAATTGCGATTTTTCTGCAATCGACACAGAAAGATCTAACAATTGCGACGAAGTTCTTATGGCGAGAAGAAAGCTCACTGCAATGAAGAACGCAATGGTCGTACTGACGAGATTAGAAGATTTGGACAGTCTTTCCGAAGACAACAGATATCTTGGCAGTGAAATTGAATTTAGAACTGCAGAGGACTTTGAATTCTCACGGAATTTAAGTCCCACTCCAGATCCACTGGAAATAAGAGACGACAATCAAAACCCGTTATGCGAGACTGAAAATTCAGTGGTTCGTTTCTTTACGGGCGCAACTAGGGTCACACTTAAAAAACCTCTTCGAAAGGACATCATTGCTAATACATTCAACGAGGTCGCAATTTCAGAGACACCAGAATCGGACGTAGAAATGACTCTGGTCTTGGAGGAAAATTCTTCCCAAGAGACGTTCGAGTCAGACGCGGAATCTCTGATCGTGCGGGACGCTAATGGGACATTACCGACAACGAGAGATCAGTCGGAGAGTCCAGACATAGTTGTGCTCGATGCTCCGTCTATAGTTTCGGTGCGAAGCCTGGCGGAAGGTATTCCAGCGGGCGCGAACATCAACGACGACGATTCTGGCAATGCGAAAGTTCACGATGACGAGGATCATGACAAACATTGCAAGCGTTGCCCCCGCGATGAACACGGAATCATCAAACGACGAGTCAAGTGCCAATACATACCGGTGACACACATGTGCATTACGTGTCGAAGCATTTTCAAAAACGCCGAGTTGCTCCAGGAACACAAAAATTCGAGCAATTCGTGCCACTTTGGCTTTTTGTGCAACGCTTGCCAAGCGACATTTGAGACGGTTGAAGATTTGACAAATCATCAAGTTTCCTGCGGCAAGCAAGGGTCGCAAACCCAAAGTTCCGTTGATGAATCAACGAATGAGGAAGAAACTTCTGACTCACAAAATCCTTCGCGCACCACTGCCGTAAAATCGCCAACCAAAGCTAATCAAAGGAAGCAACAGATCCAGAACAATATCTCGAAAAAGACGCGCTCGAAAAATCGTGCTCGAGTCGACAATCTTGTTTGTGGCGTGTGCTCGATCAATTTCGCTACGACGCAAGCGTTATCCGAGCACATTTTTAAGCACAACACCGAAGAACTTCAGGAAGCGTATCGAATCGCGAAGGCCAAGGCTTTGGAGGATAGTCAGACATCGAATGTTGCTTTGGGAAGGGAAAATGACAAGACTACGGCTAAACAGATGGCCAAGAAGAACGCGTCTAACGAAGCGAACAAAGATAAGAATCTTTTACAGGATTTCAGTGCGGAAACTGTGCAGCCGAGCGCATCCAGCGCCAGCGTCGTTAACAATGATACGTTGGTCGCGAAATCGGCAACAGTTTGTTCGTGTCACAGAGATAAAAACCCAGCGCGTCCAGACAAAACAGACCTTCAGATAGAAATGGTACTTCTTTGTCAGTACTGTTCGGTGATGTTCCGACGTCGAGAATGTTTCGAGACTCATTACCGTACGAGTCCTCAGTGCGCCAACGATAGAACACGGGGACGATGGCCGAGACTGTATTGCGCAAATTGCCAATCGACTCTGAACAGTTGGGCGGGAATGCGTCGACATTTGGAGGTTCACGCGAGCTTGAACGTCGAAGGGACGGTTCGATTCGTCTGTAACATTTGCAGAGTCGTTTTTGTCGGCTTTGGCGCCCTTTTCTACAATCACTGGTCCAGCCACTTAAAGGATAGCATGTTCGTGGCGAGCCGTTATTCATTTCCAAAGAATTCTGTACAGCCGATCGATGGCATACCGAAATTGCCAATCGGCGCATCGTCTGACGAATCTTACATTCTAGTAGCTGAGCATGTATGCTCCATTTGTAAGAAACCTTTCTCGACGAGACGCGATTTGGAGACGCACGAGAAAAGCAAGTCTTGCAGTCAAGTAGAAGAGAGCGCGACGAACGAAAAAGAAAGCGAATCTCGGTGGTACTGCGACGTTTGTGATCTGAGTTTTACGACCAGAAGAAGCTTGAACCAACACAGTAAGACAAAACACGGTCAGCGCTATCTCTGCGTAGCTACGTCGCCGACGTATCAAGCGTTCATGTGCACGCGATGTTTCGCCATGAAAAAAATGGTCAAAGAAATTGAGGATCACTGGACGACTACACCGGAGCACGATACGCCGTTGAGTTCCAACGAAATAATTAGTTCGACTGAAAGATCAAGAGCCATGAACGAAGAACCCGATGATCCGAACAAATCGAAGAACGAGAGtcaaatttctcaaaatctgcCGCCAGATACTTCTATAACTCGCATAGAAACCATAAATTCGAGCGAAAATTCGAAGACCCCAGACGATTCTGCAGTGATCGATATCGTCGAAGATATTCAACCAGAAATCGACTgcgtcttccaggctgttgtgACAACGCCAGAAAAACGGGCAGTACGTGAAAGCAATAAGGAATCTACAACGTTGACATCGACGACTCCGAGCGTTCCAGTTATAAAGACATCTAACTCGATGATGCTGCGTCAACTTCTTGGTAAAGCTCCAATGACGAGAAACTCAGATAAAGACCAAAGGACTAAGATACGAGCTCTTGAGGATCCTTGCGTCAACATCGTGCTATCAGATATATCAAAAGCAAATGTATCCGCCAAATTGGTAGTCAACAGAATTCGAAACACCGCTGCGAATGAAACTGACGATCAGCCGAGTATGGATTCCTATAACATAGTAATGACGAACAAGCCGTCTCCAGGAAATATGAAAATGGTGTTTGGTAGAAAAGGTACGACGAGCTTGTTCGAGAAAGATGCGACATTAACGAAGACGTCGGCTACCGAAGCGAACGATGAAGATTCTACTGCAACTAGTTTAGCCGCGACGATCGTATCCTCCAGTGAACCCAGCCAGGCATCGAAGAAGGTATACCCTGTAATGAAAAACACGGTAATCCGTAATCTATACGCAACGAGGCCGAATATTACGGACGGGAAGAAAAATAGCAAATCATCGAAAACCTCAGGACCCAGCCAGACTGATCCATTAGATTGTACTACAAAAACTATATCAGCTTTACCGGAGATTATCGATATAGCCGATGAAGCGGATGAAGCGGATGAAGGCGCGAGACGGCCAACGGTGAATGTAGAAAACGCATTTAAATCGATTCGAGTTATTGACAAAcagaaagtcaaaattgatccGAACAACAAGTCCGGAATCTCTAAATTAAACAAAGCTGTGGCATCGATGCAAACTCTCAAAACAAAGGGTTCTGTGATTAAAGTAAACCCATCATCGAAAGCCAATTCGTTGACCGATTCCGGGACGTCCAACCACTCGGACTCATTTGTACTGAATACTTCGGAAATATCCTTCGAAGAAGCTCGCCTAGAGGATTTAACGAGGTCGAAGCAATTACCCACCGAAGACTCTGCTGTATATAAGAAGCCGGGTTTCCTTCGTGTAAAGAATCTTTCGGAACTACAAGCTGTGAAGAGCCACACTTGCCACTCTTGCAACGCCGCGTTTGAGTCATACGCCTCGCTAGAAGAACATCATCAAGTCCACCTGTGTGCTCCGGTGGAAAAGGACCCTCAGTACCCGAAGGGAATGTCAGCAGCCCTCGTTCTGCCTGATACTCCCATTACAACATCGACACAACCGTTGCCGACGGTATACGCAGCTGGGAACGTCGTTACGCAGCAGTTGGTCGGTCTCAATTCGCCACTAGGCGTCCTATCCAGTGTCCCCGTGTCGAGCGTGATTGTAAATAACGAAACAGCGGGATCTTGGATCAGCGTTGGGAGCCAACATGACCCTATGTCTGCGGTAGCACTGGTGAACACGACTCATTCGCTCTCAGGTGGAACACTCTTGATGAACTTGAGTGGCCAACAATCAACGAATAACACTGCAGGCGCCATAATGACGACATCGATCGCAACGTCGAGTACGACTATCGCGCAGACTCAAAAGATCTTTGcggtgcagcagcagcagcagcaactacAACCATCGATGCTGGGCATTAATCAACAGATTCGTAACAATTGCAGCGGACCATTAGGTTTCCACGTCCTGCCGGCTATGGTTGTACCGCCATCGACGCAGATAGATAAGAAACAATGCACCGAGGGTGCCTTGCGCAATACTTCCACTGCTAATCTTCCAATCAACAGCCAGATAAACAATACACCTTTCACGTATCACTCCGACAGACCTAACAGATACCTCTGCAACATATGCACTACTTTCAGATGCAATAGTATCGGGACGATGAACACACACGTGATGAAGCATTACACTGCTTACAGCAACTCAACCCCGAGTCAAAATTCGATGCAATCTGCGGTAGGATCAATTCCTAACACTTCTTTTCTCGGTACGAAGGAGGGAACGCCGCGAAATCAGCCGATGCGATACAAAGGGACGGAATCGAATACAACTAGAAATCTTATTAAAAACAGTTGGTTCATGAAAAATACGCCTCAAGGACTAGTCTGGGTGACTTCGTTGACAGCTGCGACGAGCCAACAACCCGGATCTTCCTCTGGATTGGACAACAATCAATACGTAGGACCTTACCTGCCTCATCAGATGAATTCAAGCTCTCCAATTATTCGCGGCGGTCAGGTAGTCTATCGTTGCTTGGTCTGCAAATCTGCTATGTACAAAGCATATCCACCTCTTCGCAATCACGTGATACTCGTTCACGGGATAACCGATTTCATTTCTTCGGGACTTCAAAGTATTGTACAAAAGATCTATCTCTGCACGCACTGTGGCCACGGAACCGCTATGTACGATTCCGAGGAAGGTTTGCGTCAACATATTGACTCTTGTCACACCAACACCTGTCCGACGTGCCGGCGCGCCTTCGCCAGCCAACTTAGCTTGAAATCGCATCTCGGATACTGCAATGCACCATCTCGCGATACTCAGAATGCTTCTGGTAACAACTGTTGA
- Protein Sequence
- MPYAEKNFIKKTKPNKRNSFKAMGGSRGTTESAELEPESSKNSENRSPDADGTEQILRSVADDAHKNRNITEGYITSSISDEDQLKICRTISVKLIRLPEALVNKCMVLSDVKAKKKRSQYTWKHGFVDKHKRQKYLRQKRSRALLEKSILMKSLKFDGDQEDPNDAEKLGPDEIVNGEIPNKFESTTNEELPSDTFELSIESTEGNENEIHKCVEFTEICETTVEECDTSESPASESIEPTETYAESQHQPDERNFTEIPRQIDTCLVTKICQDSANATINPTKISSQSSLVVSPEQNNNQNRKICSRRLPEPTSSITIEPVETRKRLLQYDDDETEETQRHLLKKLKSVDSVNTFEGEAIEEGRNTSESSESTAPIAREITLSEINQCDPKSVRRRTKPTGKNILREASVCLFRLEDSQDPLVLNWKLKTTLELLSDITVTACTTSPINNHLDFEVYSEPGAVVAGVPITSLEDPLETLDANKIPNRPQDTSTDSLSKEDTSYLSRGEENTTLTDSDETESSEEDEDDEEIVRFLRTRRKVRPSVYSSSSASSSSCQEITSPRLLRSNTLSVNSSSVEKISYCNETSETPALRSRIRLISTNSSSSEDTRNHKEIPKTSPRRHEEAIKTPVLLKRINRKPANRLTSDSECSREELRKPPLNRRKPFRVVMKKSDFESTLNNSKCLNSYFSKDEASVSALTHARYSREEVSNQNEDDAGIMNECANRSVARTSNFVTCGHDQEDDVSLEALAEVNCDFSAIDTERSNNCDEVLMARRKLTAMKNAMVVLTRLEDLDSLSEDNRYLGSEIEFRTAEDFEFSRNLSPTPDPLEIRDDNQNPLCETENSVVRFFTGATRVTLKKPLRKDIIANTFNEVAISETPESDVEMTLVLEENSSQETFESDAESLIVRDANGTLPTTRDQSESPDIVVLDAPSIVSVRSLAEGIPAGANINDDDSGNAKVHDDEDHDKHCKRCPRDEHGIIKRRVKCQYIPVTHMCITCRSIFKNAELLQEHKNSSNSCHFGFLCNACQATFETVEDLTNHQVSCGKQGSQTQSSVDESTNEEETSDSQNPSRTTAVKSPTKANQRKQQIQNNISKKTRSKNRARVDNLVCGVCSINFATTQALSEHIFKHNTEELQEAYRIAKAKALEDSQTSNVALGRENDKTTAKQMAKKNASNEANKDKNLLQDFSAETVQPSASSASVVNNDTLVAKSATVCSCHRDKNPARPDKTDLQIEMVLLCQYCSVMFRRRECFETHYRTSPQCANDRTRGRWPRLYCANCQSTLNSWAGMRRHLEVHASLNVEGTVRFVCNICRVVFVGFGALFYNHWSSHLKDSMFVASRYSFPKNSVQPIDGIPKLPIGASSDESYILVAEHVCSICKKPFSTRRDLETHEKSKSCSQVEESATNEKESESRWYCDVCDLSFTTRRSLNQHSKTKHGQRYLCVATSPTYQAFMCTRCFAMKKMVKEIEDHWTTTPEHDTPLSSNEIISSTERSRAMNEEPDDPNKSKNESQISQNLPPDTSITRIETINSSENSKTPDDSAVIDIVEDIQPEIDCVFQAVVTTPEKRAVRESNKESTTLTSTTPSVPVIKTSNSMMLRQLLGKAPMTRNSDKDQRTKIRALEDPCVNIVLSDISKANVSAKLVVNRIRNTAANETDDQPSMDSYNIVMTNKPSPGNMKMVFGRKGTTSLFEKDATLTKTSATEANDEDSTATSLAATIVSSSEPSQASKKVYPVMKNTVIRNLYATRPNITDGKKNSKSSKTSGPSQTDPLDCTTKTISALPEIIDIADEADEADEGARRPTVNVENAFKSIRVIDKQKVKIDPNNKSGISKLNKAVASMQTLKTKGSVIKVNPSSKANSLTDSGTSNHSDSFVLNTSEISFEEARLEDLTRSKQLPTEDSAVYKKPGFLRVKNLSELQAVKSHTCHSCNAAFESYASLEEHHQVHLCAPVEKDPQYPKGMSAALVLPDTPITTSTQPLPTVYAAGNVVTQQLVGLNSPLGVLSSVPVSSVIVNNETAGSWISVGSQHDPMSAVALVNTTHSLSGGTLLMNLSGQQSTNNTAGAIMTTSIATSSTTIAQTQKIFAVQQQQQQLQPSMLGINQQIRNNCSGPLGFHVLPAMVVPPSTQIDKKQCTEGALRNTSTANLPINSQINNTPFTYHSDRPNRYLCNICTTFRCNSIGTMNTHVMKHYTAYSNSTPSQNSMQSAVGSIPNTSFLGTKEGTPRNQPMRYKGTESNTTRNLIKNSWFMKNTPQGLVWVTSLTAATSQQPGSSSGLDNNQYVGPYLPHQMNSSSPIIRGGQVVYRCLVCKSAMYKAYPPLRNHVILVHGITDFISSGLQSIVQKIYLCTHCGHGTAMYDSEEGLRQHIDSCHTNTCPTCRRAFASQLSLKSHLGYCNAPSRDTQNASGNNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -