Ccal023362.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012706.1:11444760-11449929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9 3.8e+02 3.3 0.2 5 21 85 101 84 102 0.93 2 11 4.1e-06 0.00082 21.1 0.7 1 23 110 133 110 133 0.96 3 11 0.00029 0.059 15.3 1.5 1 22 178 199 178 199 0.97 4 11 2.3 4.6e+02 3.0 0.2 2 12 212 222 211 224 0.87 5 11 0.00016 0.032 16.1 0.1 1 20 255 274 255 276 0.93 6 11 4.5 9e+02 2.1 5.7 2 23 286 307 285 308 0.94 7 11 0.33 66 5.7 0.6 3 21 415 433 414 434 0.95 8 11 0.067 14 7.9 0.1 1 20 508 527 508 529 0.82 9 11 0.0047 0.95 11.5 0.5 1 21 539 559 539 563 0.91 10 11 0.0052 1 11.4 4.6 1 20 580 599 580 601 0.95 11 11 7.4 1.5e+03 1.4 0.3 1 9 605 613 605 628 0.71
Sequence Information
- Coding Sequence
- ATGAAGAGAAATCTCGCTCGTCATATGAACTTCGAGTGCGGCGGACAGCGCAACTATGCATGTCACGTGTGTCCATCAAAATTACGAGACGGAGCAGCGGTTCGAGTGCCAACAGTGCGGCCGGAACTACACGAAACGACGCAATCTCATTCGTCACAGTATATTTCCATCGAAAATGCATACGCTAACGTACGACGAAGGAAATCGAGACACGACTTTCGTCGAAGAGAGGGCATCCCTTTACTGGAATGCGTGTGCGGCAGAACTTATTTGAAGCAAGCGGGTCTCTACAAACATCAACGCTACGAGTGCGGTGGTCAGCAGAGATATATCTGCGACGTTTGTGGAAGAGGTTTCTCGCAAAATTCTAGTCGTCGACGTCATCTCAGACTAACTCACAATATCATAAAACCACCTATTCCTCGAGACGCTAGATCAGCTTTCCCTCTGTACCCCGAGTGTTCGATCAATGAGAATACGCAAAGGTGGGATTCGATATCTTCGACGTGGATACCCGAGGCCGACAAGCCCTTCGTTTGTACCAGTTGCGGCAAGGGATACACTCACATATTCACGCTTAATCGACATCGTCGAACCGTCTGCGGGAAGATAAAAAGCGCCAGCGGAAACTGGAAGTGTCCGCGTTGTTCGAGAACATACGTAAACGAGGTCTTAGGATGGTCCAACGATCCGGCGTTCTTGTACGATCTGAGAAACGGTTTCTCCCAGGATAACCGTGGTCGGGGCAGACGACAGAGATCTTTCGCTTGTTCAGTTTGCGGCAAGGCCTACACTGTGTGGCGATCGCTCTGGAGACACGAGAAGTTTGAGTGCGTCAACGCTAGACCTGCCATTTCCTGCGATCTTTGCCCGTACAAGAGTCCTCACAGGTGGTGCGTCCAGAATCACAAGAAGAAACATCACGGCGATCTGTCCACCGGCCAATATGGCTCAATGTTGAACCGATGCTTTAACTATTTTGAACAATATGTTACAGAGCCCGAGATCACCGAGGAGGAATatatatcggtgtctgatatCGAAGATGAAGAAACGGAAGAAGCAGAACAGGAAGACAACGAAATCGTGAAACGCGACGATTCGAGGTTCATGGATTATACCAACgaggagaaaaagaaagaaagtgaATGCGACGCGAAACACAATTTTGCAAATAATCATCAGGAAACTACAGACCTCTTCGAGGAAGAGATTACGGTAAAAGGAAACGAAGAGTGGCTGTGCGAGAATTGTGGAACTGTTTACCCTTGTGCGACTTCTCTGAGTAAACATCGTAGAAACTATCGGAATCGTAAAGAATCGACTTCAAACTCGCAGACTCCCGAGTATATCATCGAGGAAGAGATCGAATCGCTGGAAAACGATATGGCAGAACACTGCGAAACGGAAGGTATTCTCGAGGAGTCAAGCAACTCGAAGGATTCAGCGTTTCGGGATGTTCTGACCATTCACAAACCTCGTTTTCGCGAAATTCTTAAGTACGACTCGAACGACGGAGTATACTCGTGTTGGGACTGCGGCAAAACTTATCTTTGGGCATCGTCGTTGTCGCGGCATCGTACCATCGAGTGCGGGCCCAAGAACAAGAAAAGATTCGTCTGCACTCTGTGCGACTACAGAACGGGATACAAGGGCAATTTCGTGAGGCATCTCAAGGCACCGCGCCACTTATTCAACAGATATCGCAAGCTGTACATGGGTGAACAAATGCTCGGTTACACTTGCACCAAGTGCAGCAAGTTCTACAAGATGTGGAGCAACTATCTGAAGCACAAGTGCGAGCCACCGCAGTTCAAGTGCACGATGTGTCCCTTCGCCGCGTTTAAAGCATTCATACTGCACGCTCATCAGGCTGAGCAGCACTTCAATATATCCTCGAATTCTTGA
- Protein Sequence
- MKRNLARHMNFECGGQRNYACHVCPSKLRDGAAVRVPTVRPELHETTQSHSSQYISIENAYANVRRRKSRHDFRRREGIPLLECVCGRTYLKQAGLYKHQRYECGGQQRYICDVCGRGFSQNSSRRRHLRLTHNIIKPPIPRDARSAFPLYPECSINENTQRWDSISSTWIPEADKPFVCTSCGKGYTHIFTLNRHRRTVCGKIKSASGNWKCPRCSRTYVNEVLGWSNDPAFLYDLRNGFSQDNRGRGRRQRSFACSVCGKAYTVWRSLWRHEKFECVNARPAISCDLCPYKSPHRWCVQNHKKKHHGDLSTGQYGSMLNRCFNYFEQYVTEPEITEEEYISVSDIEDEETEEAEQEDNEIVKRDDSRFMDYTNEEKKKESECDAKHNFANNHQETTDLFEEEITVKGNEEWLCENCGTVYPCATSLSKHRRNYRNRKESTSNSQTPEYIIEEEIESLENDMAEHCETEGILEESSNSKDSAFRDVLTIHKPRFREILKYDSNDGVYSCWDCGKTYLWASSLSRHRTIECGPKNKKRFVCTLCDYRTGYKGNFVRHLKAPRHLFNRYRKLYMGEQMLGYTCTKCSKFYKMWSNYLKHKCEPPQFKCTMCPFAAFKAFILHAHQAEQHFNISSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -