Basic Information

Insect: Cylloceria caligata
Gene Symbol: lola
Assembly: GCA_963942595.1
Location: OZ012706.1:11382291-11387133[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0031 0.63 12.1 0.6 1 21 38 58 38 59 0.93

2 11 0.0069 1.4 11.0 4.4 1 23 67 90 67 90 0.97

3 11 0.00012 0.024 16.5 0.5 1 21 160 180 160 181 0.95

4 11 0.00069 0.14 14.1 0.3 1 23 189 212 189 212 0.97

5 11 9.4 1.9e+03 1.1 0.4 1 7 276 282 276 287 0.89

6 11 3.2e-05 0.0065 18.3 0.5 1 23 306 330 306 330 0.98

7 11 4e-05 0.0081 18.0 2.8 1 23 337 360 337 360 0.98

8 11 0.019 3.9 9.6 0.0 1 21 385 407 385 408 0.94

9 11 0.00054 0.11 14.5 2.1 1 23 416 439 416 439 0.95

10 11 0.0049 1 11.4 3.5 1 21 505 527 505 532 0.93

11 11 8.7e-05 0.018 17.0 5.8 1 23 536 559 536 559 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0031	0.63	12.1	0.6	1	21	38	58	38	59	0.93
2	11	0.0069	1.4	11.0	4.4	1	23	67	90	67	90	0.97
3	11	0.00012	0.024	16.5	0.5	1	21	160	180	160	181	0.95
4	11	0.00069	0.14	14.1	0.3	1	23	189	212	189	212	0.97
5	11	9.4	1.9e+03	1.1	0.4	1	7	276	282	276	287	0.89
6	11	3.2e-05	0.0065	18.3	0.5	1	23	306	330	306	330	0.98
7	11	4e-05	0.0081	18.0	2.8	1	23	337	360	337	360	0.98
8	11	0.019	3.9	9.6	0.0	1	21	385	407	385	408	0.94
9	11	0.00054	0.11	14.5	2.1	1	23	416	439	416	439	0.95
10	11	0.0049	1	11.4	3.5	1	21	505	527	505	532	0.93
11	11	8.7e-05	0.018	17.0	5.8	1	23	536	559	536	559	0.97

Sequence Information

Coding Sequence: ATGCTGAATTTAATTTTAAGAACGAAACGATACGCCGATTCGGTGTTCAGGAATTTTACGCTGGACGAGAATGGTGCATCATGGAAGGGCAGTCCTGATGATAGGCAAACATTTCCCTGCTCACAGTGCAAAAGTGTCTTCAGTAGAAAAGGCGGCCTGACGTATCACGAGAAGTACGAGTGTGGTCAGAGTCCACGTTTCCACTGCCCATACTGTAACTATCGTGCGAGTCATATCTCGAACGCTCGCAGACACGTTCGAAGACGTCATCCTGACGAAGAAGTCTTTACCCACAGGTTTCCCGTTACCAGTGTCCTTGCCCTATCGGGTGAGTCACATATCGAACTCCCGCAGACAAGTCCGAAGTCGTCGCACTTGAAGCCAAATCTGACGAGTAGAATGCCGCCGATGTACATCGATTCATCAATATCACAAGGAAATCACTTTCCGATACGCCTATCGAAAGGCGTGGTCAAGTACTCCTGTCCCGGCTGTCCGAGTGTCTTTAACAGGCTTAAGAATCTCAAATCTCACGTGAAGCATTTGTGCGGTCGTGCGCCCAAGTACGCCTGTCCTTACTGCGAATATACAAGCAAACAGGTGTCGAATGCACGATCTCACGTGCGTCGGATTCATCCTGATGAAAAATTGGTGCAAGAATTTGAGTCTCACGATGTCGACGATAACGAGACTTTCGAAACACAGAAGAAGCCAGGCTTCGAGCACGTCAACGTCAACGTCAATCCATATATCGGGGTTCAAGGAGAAGAGTCGCGGCTTAAAATCCGAAGAATTGGTCGTTACGGTCAAACGTTGAACAAACGTTTCCCGTGTCCGCATTGCCCGAATGACTGGACGTTTCATCCTCATGCCGGAAGAGTGAAGCGCAAGAGCCAAGAGTCCCTGGAGCTGATCTATACCTGCCCAAACGCAAACTGCACAAAAGCTTTCAGTTGGAAAGGCAACTTGAACAGGCATCTTCGTTATCACTGTGGTTTGGAGCCTCGCTTCAAGTGTCCCTACTGTGATTACCGCTGCAAAGTCAAGGCCGACGTGGAAAAGCACATACGACGGAAGCACGAAAACTTGTGTGTCTTTGTTGTCGATGTACTGAAACCCTGGACACCCATGACAGACTCCTGGCGTATTAAATTCGCTTGCCCAAATCCGGGCTGCGACAGAGCATTTTACTGGAAAGGCAGCCTGACCTGGCACCTCCGTAATGCTTGTGGTCAACAGCCGCGTTTCAAGTGTCCCTACTGTAATTATCGATGCAAGGTTAAAGGCGACATTCGCAAGCACATCGGTAGAATTCACAAAGACAAGAGGGTTCAAGTGGTCGATCTGTGGAAGGACAGGGCGCGCGGCACGATTACGAAGATCTACCAAGTGCGAGCATGTTACTACGTGGCATTTCACGTTGCTCTTTCTCACCTATCGACATTTCTTCTGTTTCCAGATTTTTTGACTTCATATTCAATAACGGATACGCCTGTACGAACGAATTCGAGATACATCTGTACGAACGAAGGCTGTGGAAGGAGCTTCAGCTGCAAGTGGAATCTTACGAGTCATCAGAGATACCAGTGCGGTCATCAGCCGCGTTTCAAGTGTCCCTATTGTAACTACTATTGCAAGACAAAATCCAACGTCACGAGACACGTCAGAAACAAGCACAAGGATCAAGAGACTTACGTAATCGATATTTGCGAAGGGTTCAGCTGA
Protein Sequence: MLNLILRTKRYADSVFRNFTLDENGASWKGSPDDRQTFPCSQCKSVFSRKGGLTYHEKYECGQSPRFHCPYCNYRASHISNARRHVRRRHPDEEVFTHRFPVTSVLALSGESHIELPQTSPKSSHLKPNLTSRMPPMYIDSSISQGNHFPIRLSKGVVKYSCPGCPSVFNRLKNLKSHVKHLCGRAPKYACPYCEYTSKQVSNARSHVRRIHPDEKLVQEFESHDVDDNETFETQKKPGFEHVNVNVNPYIGVQGEESRLKIRRIGRYGQTLNKRFPCPHCPNDWTFHPHAGRVKRKSQESLELIYTCPNANCTKAFSWKGNLNRHLRYHCGLEPRFKCPYCDYRCKVKADVEKHIRRKHENLCVFVVDVLKPWTPMTDSWRIKFACPNPGCDRAFYWKGSLTWHLRNACGQQPRFKCPYCNYRCKVKGDIRKHIGRIHKDKRVQVVDLWKDRARGTITKIYQVRACYYVAFHVALSHLSTFLLFPDFLTSYSITDTPVRTNSRYICTNEGCGRSFSCKWNLTSHQRYQCGHQPRFKCPYCNYYCKTKSNVTRHVRNKHKDQETYVIDICEGFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -