Ccal002308.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012703.1:10514108-10515331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00055 0.11 14.4 2.6 1 23 80 103 80 103 0.97 2 9 0.0013 0.26 13.3 0.3 1 23 109 132 109 132 0.97 3 9 7e-05 0.014 17.3 0.7 2 23 182 203 181 203 0.96 4 9 0.00016 0.032 16.1 3.5 1 23 209 232 209 232 0.95 5 9 0.0008 0.16 13.9 5.3 2 23 238 260 237 260 0.93 6 9 0.0001 0.021 16.7 0.4 1 23 265 288 265 288 0.98 7 9 1.6e-06 0.00032 22.4 0.4 2 23 305 326 305 326 0.96 8 9 3.2e-06 0.00065 21.5 0.6 1 23 332 354 332 354 0.97 9 9 7.3e-07 0.00015 23.5 0.2 1 23 360 382 360 382 0.98
Sequence Information
- Coding Sequence
- ATGCGAGGGCGGTTCCATGGCATCGCGACGGAGGATGGTATTACGTACACGAACGTAAAGAAGCACTCGATGGGGGACGATGTCGTGGAAGTCGATCCATTTTACAATGTAATGGTCAAGAAGGAGGAAGATATTTCCCCTACGGAGGAGATCGAGGAGGATGCGTCATTGGCGGACGAGGGCGAGGAGCTAGTTCATTTGAACGACGATGTCGACGAGGAGGAGGTGTACGGCGACTATTCCTGTCAGAAATGCATTATCTGCTTTCCGACATGGAATATGCTGAAAACGCATATGAAATCCACTCACGAGGCGATACAGTGTTTCAAGTGCAAGATATGCTTGAAAGTTTACAACAACTTGGAGCCGTTTGTGCTGCACATCTCGACGGAGCACTCGCAAGAGGCTCGCAACACTGCCGACTGTCTAGAGACTCTGACGCTCTATCGAGTTTCCCGTGGTACTTCGCTCTACACTCGCAACAAACGTAAGCACAACACGGATAGACCGTCGACGACGAGTGAAAAGTCGTATGAGCTTTTGTCATGCAGCCGATGCGACTACAAAACGAAGAACAAGAGTGAACTGACGGCTCACGTTGCGACACACGTGGACGACGTTAAATTCTCGTGCAAGACGTGCGGCAGAAAATTTAAAATTCGTCGCAATCTCACGTATCACGTAAGATTTAGCCATCGCGAGCACACTTGCATATGCGACATTTGCGGGAAAACATGCGCCAACAACAAATCACTTCACGCTCATCGAAAGTTCGTGCATTTCAAGGGAAAGTACGAATGTAATATATGTAACCGACTGCTCATAAGCCAGGAAAATCTTGACACGCACATGAAGCGACAGCACGTGGAGAAGAAACCGGTCAAAGGTCTAAAACCTAAACCCGAGAATGCTGTTTGCGAGGCATGCGGCAAAGTCTTCACTAAGAGCGAAAAACTCAAGATGCACATGCGAGTTCACACCGGCGAGAGACCTTACGTTTGCGCCGTTTGCAAGGAATCTTTCTCACGGAAAAATTCGTTGAGGCAACATCTGCTGTTGCACACCGGCACAAAACCTTACGTTTGCGATATTTGCGGCAAAGCTTTTACTCAAAAGCCTGGTTTGACCGGACATCGAAAATCTCATCCCGGCTCGCATCCACCACTTCCGCCCGTCTTCATTGGCCCTATTCTCGATGACGTTCTGCGTCGTTGCGAACAGTAG
- Protein Sequence
- MRGRFHGIATEDGITYTNVKKHSMGDDVVEVDPFYNVMVKKEEDISPTEEIEEDASLADEGEELVHLNDDVDEEEVYGDYSCQKCIICFPTWNMLKTHMKSTHEAIQCFKCKICLKVYNNLEPFVLHISTEHSQEARNTADCLETLTLYRVSRGTSLYTRNKRKHNTDRPSTTSEKSYELLSCSRCDYKTKNKSELTAHVATHVDDVKFSCKTCGRKFKIRRNLTYHVRFSHREHTCICDICGKTCANNKSLHAHRKFVHFKGKYECNICNRLLISQENLDTHMKRQHVEKKPVKGLKPKPENAVCEACGKVFTKSEKLKMHMRVHTGERPYVCAVCKESFSRKNSLRQHLLLHTGTKPYVCDICGKAFTQKPGLTGHRKSHPGSHPPLPPVFIGPILDDVLRRCEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414530;
- 90% Identity
- -
- 80% Identity
- -