Basic Information

Insect: Cylloceria caligata
Gene Symbol: prdm10
Assembly: GCA_963942595.1
Location: OZ012708.1:10850691-10860670[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.1 20 7.3 4.1 2 23 481 502 480 502 0.95

2 14 4.8e-08 9.8e-06 27.2 1.3 1 23 536 558 536 558 0.98

3 14 0.016 3.2 9.8 1.7 1 23 566 589 566 589 0.97

4 14 0.031 6.3 8.9 0.2 2 23 607 628 606 628 0.95

5 14 2.6e-05 0.0052 18.6 0.5 2 23 643 664 643 664 0.96

6 14 0.00015 0.03 16.2 2.3 1 23 681 703 681 703 0.98

7 14 0.0077 1.5 10.8 1.6 2 23 712 733 711 733 0.96

8 14 0.0077 1.5 10.8 0.1 1 23 740 762 740 762 0.98

9 14 0.00019 0.038 15.9 2.8 1 23 769 791 769 792 0.95

10 14 0.085 17 7.5 2.4 1 23 797 819 797 819 0.98

11 14 1.5e-05 0.0031 19.3 1.8 1 23 825 848 825 848 0.97

12 14 0.002 0.4 12.7 1.7 1 23 881 904 881 904 0.97

13 14 0.00015 0.03 16.2 2.0 1 23 926 949 926 949 0.95

14 14 0.0044 0.9 11.6 3.4 3 23 987 1008 987 1008 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.1	20	7.3	4.1	2	23	481	502	480	502	0.95
2	14	4.8e-08	9.8e-06	27.2	1.3	1	23	536	558	536	558	0.98
3	14	0.016	3.2	9.8	1.7	1	23	566	589	566	589	0.97
4	14	0.031	6.3	8.9	0.2	2	23	607	628	606	628	0.95
5	14	2.6e-05	0.0052	18.6	0.5	2	23	643	664	643	664	0.96
6	14	0.00015	0.03	16.2	2.3	1	23	681	703	681	703	0.98
7	14	0.0077	1.5	10.8	1.6	2	23	712	733	711	733	0.96
8	14	0.0077	1.5	10.8	0.1	1	23	740	762	740	762	0.98
9	14	0.00019	0.038	15.9	2.8	1	23	769	791	769	792	0.95
10	14	0.085	17	7.5	2.4	1	23	797	819	797	819	0.98
11	14	1.5e-05	0.0031	19.3	1.8	1	23	825	848	825	848	0.97
12	14	0.002	0.4	12.7	1.7	1	23	881	904	881	904	0.97
13	14	0.00015	0.03	16.2	2.0	1	23	926	949	926	949	0.95
14	14	0.0044	0.9	11.6	3.4	3	23	987	1008	987	1008	0.98

Sequence Information

Coding Sequence: ATGGATTCAAGGGGCCCTCCCGAGGGGGCCCCTGCTGACCCACTTGCTTTGCCAATTATTGACAAATCATCAGAAATTTCGGATAATTGGGCCACCAGTCATCTAGTCACCTCGGCTTTTGGTGATCAGTCCAGAAAATCCAACAACACACTACTCTTTTTGACTGTTGGTTACATGGAAGATCAAAGTCGAGACTACTCCAGGATGTTCCCAGCTTACGAGCAAACACCATTTTCTTCTCATCCGGCATCTCCTCTCTCAGATCTGGAACAACGCGTCAGCACTCTAGATCCCAATATGAGCTCTGCTGCAAGATATTCTCCTACACCTGTTCCACTTCCACCTCTGCCTTTTCCAAATTCTGTGGTAGTTCTTCAAGGTCCACCTTCGCCCTTTGTCACTCCACCTGAAACTAACCTTCGAACAAACATCAATTTTGTTGCTACTCAGAATTGCGATCAGAGCGTACCACAGAGTGACAGCATCAATGACTTTGGTACTAATGTGAATGAGAGTTTGGGTTCCACTGGAGAATTAATTTTAATGCAAGGTGCGAATTCGGAATTGGAATCCTCAGCAGCACCATTGATGCTCACCGGTATTCCCGGTACCGAATTCGCCTTGACGAGAGATTTTCTCGTAATGCAAGACGATCAAATCAACGTGATGAGCGCTCTGAGAAATCAAGAAATGACCGCCGAACAAACTGTTGTTGTGTCTCAAACGATTGATACAAACGAACAGAACGTTCTTTCGGAATTCGCTTCAATGCCAGAAAAGGATGCGGGAAAGGACAAAGCGTTGTCGATAAAAGAACCTGAGATAATAGAAACAGAAAAAAGATCCGTAAGACGATCCAGACGCCaaattaatgataaaaaaacGTTTTGGTGCGAAGAATGCGACTCTGCGTGTCACAAAGCTGGCGAATGCACGACGAACAACGTGCGCACGATTGCTGATCAGCCTGTGCCTTCGCGTGCTATTGCCACCCTGCCAGGCTCTTATCTCTCCATCAACGAATTGTCAGTGTCGAACACAACACCAGGAGGCTCGGATTTTGGGGTCTTTGCCAAACGTAACATCCGAGCACGCACCCAATTCGGTCCGATTGAAGGAATTCTTTGGCCTTATTACGGCGCGCCGTTTGATAATGTTTTACCATTACTCTATGAAACCGATACCGGGGAATTTATGAAGATCGACGTATCTAACGAAAATGCTTCCAACTGGATGCGATTTGTAAGACCTGCTACAACGTATAAAGAGCAAAATCTAGGGATCTGTCAGCAAGGTGACGGCATCGTTTTTCTTACAACTCGAAACATTCTACCGAAAGAGGAACTGAGGGCCGGGCCTAATCCAGAATACGCCATACGCAGAAACCTGCCGGTTCTCCAGTCTGAAGTGAAAGATGAACCAAGTGACTCGAGCGCATGGCCGTGTTTCAAGTGCAATCGGCGTTTTCTAACTTGCAAAAAGCTTCAAAGACATCTGACTGTGCACGAGAATCCAAAAACTGAGAGCAAATCGAGAATGAAACTTAGAAAGGTAGCCGTTTCTACCAACAAACTGTTGAAAATTGTGGATGGTCAGACGCTGTTGTACACTTGTCCACACTGTCCCAAAGTATTTCCACGAAGTTACAGTCTGAAGCGACACTTGCTCATACACCAGGGAGCCAAAACTCCGCTATACGAGTGCCCGTCGTGTGGAGAAAACTTTTTACATCCTTATAATCGCAGTCATCACATAAAAATACTTCATGGGGGTAGAACGAAGGAAAAGGAGAATTCACGACAAAATTCATCTGAGTGGAAGTGTTCGATGTGCAGTTTCATATTTGGCAAAGCAAGTTTATTGAGTATACACACTCTGCTTCATTCGGGCAACAAAGATATTATCGTGGCTGAAACTTTTGATAATTCCTGTCCGCAATGCGATGAACAATTCAAAACACGCAGCGAATTGATTAATCACGTTTCCAAACACGCACGTTTAAAATTACCAAAATCAACGAAAATGACACCACTAGCATCGTACAAGTGTACAATGTGTTACAAACGTTTCGCTACCAAAGTCCGATTACAGCAGCATTATTTGGTACACGGAGCCGACGACCAAAAGCCACTGCCATGCAATATTTGCGCCAAACGATTTATGAACAACTCCGCGCTTTCGTGTCACCTCAAAACCCACAGGGAAGACAAACAGATATTCGAATGTCCGATGTGCCGAGAGCTTTTCAATCAGGTTTTAATGTTAAAAGATCACATCGAAACACATCGAAACGAGGACGAGACTTTCAGTTGTCCTCACTGTCCTAGGAGTTTTGCAAAATATTCGGTTATTCGTAAGCACATAAGAGCTCATCACTGTGAACGAAAGCACAAATGTCAGTTTTGCGCAAACCGTTTTCCCACCGTCGACAAGCTGCGAATGCATTTGCTCCGTCATTCCGATCATAGAGAATTTCGTTGTGCAAACTGTGAAAAACAATTCAAGCGAAAAGACAAACTCAAGGAACACATGGCGAGGATGCACAATGCTCAACGAGTTAAGCGCGATCAGGCATTGCAGAACAATCAAATGAAGAAATTCGTACCAAAGATTAATCCAACGGATTACAATCGATTTGTGTACAAATGTCATCAATGCCTCGTTGGTTTTAAAAGGCGAGGTATGCTCGTTAATCATCTGGCGAAACGCCACCCAGACGTTGCTCCCGAATCTGTGCCGGAATTGAATTTACCGATTTTACGCCAAACACGAGATTATTACTGTCAATACTGCGACAAGGTCTACAAAAGTAGCAGCAAGAGAAAAGCGCATATCGTCAAAAACCATCCGGGAGCGGCTCTGCCTCCGAGCAATCGTCACAAAGAGGCCGACTTAGTCGGGTTGCCGAATCCGACCTTCAGTCAAACAGTCGGAAGCATACGAACAACGCCACAGGGTTGTCAATGGTGTCACAAGCAATACGCGAGCAAGGCAAAGCTCCTTCAACATCAGCGAAAGAAGCATTCGGCGCTGATGGCGCCGGCCGATCAGATGCCACGATCGCGAAGTCGACCATTTTGCAAAGGAAGGCAGACACAGGCGAATCACATTGACGACGGAGATTTCATGATGAGCGAGTACATAGACGACTGTGACGTAAATACAGATTTTCCCACGCCGACAATAATCAAGTTTACGGCTGGGGTCGATATGATAGGCAACAGTCTCGAAATGGTGGGTCAGCAGTTCGTACGTATGCGCGACATACGTTGA
Protein Sequence: MDSRGPPEGAPADPLALPIIDKSSEISDNWATSHLVTSAFGDQSRKSNNTLLFLTVGYMEDQSRDYSRMFPAYEQTPFSSHPASPLSDLEQRVSTLDPNMSSAARYSPTPVPLPPLPFPNSVVVLQGPPSPFVTPPETNLRTNINFVATQNCDQSVPQSDSINDFGTNVNESLGSTGELILMQGANSELESSAAPLMLTGIPGTEFALTRDFLVMQDDQINVMSALRNQEMTAEQTVVVSQTIDTNEQNVLSEFASMPEKDAGKDKALSIKEPEIIETEKRSVRRSRRQINDKKTFWCEECDSACHKAGECTTNNVRTIADQPVPSRAIATLPGSYLSINELSVSNTTPGGSDFGVFAKRNIRARTQFGPIEGILWPYYGAPFDNVLPLLYETDTGEFMKIDVSNENASNWMRFVRPATTYKEQNLGICQQGDGIVFLTTRNILPKEELRAGPNPEYAIRRNLPVLQSEVKDEPSDSSAWPCFKCNRRFLTCKKLQRHLTVHENPKTESKSRMKLRKVAVSTNKLLKIVDGQTLLYTCPHCPKVFPRSYSLKRHLLIHQGAKTPLYECPSCGENFLHPYNRSHHIKILHGGRTKEKENSRQNSSEWKCSMCSFIFGKASLLSIHTLLHSGNKDIIVAETFDNSCPQCDEQFKTRSELINHVSKHARLKLPKSTKMTPLASYKCTMCYKRFATKVRLQQHYLVHGADDQKPLPCNICAKRFMNNSALSCHLKTHREDKQIFECPMCRELFNQVLMLKDHIETHRNEDETFSCPHCPRSFAKYSVIRKHIRAHHCERKHKCQFCANRFPTVDKLRMHLLRHSDHREFRCANCEKQFKRKDKLKEHMARMHNAQRVKRDQALQNNQMKKFVPKINPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADLVGLPNPTFSQTVGSIRTTPQGCQWCHKQYASKAKLLQHQRKKHSALMAPADQMPRSRSRPFCKGRQTQANHIDDGDFMMSEYIDDCDVNTDFPTPTIIKFTAGVDMIGNSLEMVGQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01207577;
90% Identity: -
80% Identity: -