Ccal002293.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012703.1:10473833-10475110[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2e-05 0.0025 19.6 1.0 1 23 152 174 152 174 0.98 2 9 1.8e-07 3.6e-05 25.4 3.3 1 23 180 202 180 202 0.98 3 9 0.00031 0.063 15.2 0.6 1 23 207 230 207 230 0.98 4 9 7.6e-06 0.0015 20.3 1.1 1 20 236 255 236 258 0.94 5 9 2.3e-05 0.0046 18.8 0.3 1 23 264 287 264 287 0.97 6 9 0.002 0.41 12.6 0.7 1 23 298 320 298 320 0.90 7 9 6e-05 0.012 17.5 3.3 1 23 324 346 324 346 0.95 8 9 2.3e-06 0.00046 21.9 2.9 1 23 352 374 352 374 0.98 9 9 1.7e-06 0.00033 22.4 0.6 1 23 380 402 380 402 0.98
Sequence Information
- Coding Sequence
- ATGGACGATTTCTTTCGAATCCCAAAGTCTCTGTGCTACTTCATCATGAGACATCCACCGATCGACGAGAAAGTAGCCGCGGATCTGTCCTCgttgaataaagaagaagacgccgagagaaaagaaagaatgaaaaaaaaatcgcgatCTTTAACGATTGAAAAATCGATATTGATACCAGAGGTGAAGATAGAGTGTCCTTCCGACGAGGAATTGACTGAGGTCAAGCCGTTAAGAAGGAGAAGAAAACGAGGCGAGAAGCGAAAAAGAGTTGAAATTAAATCTAACACCATCGCgtgcaaaaaaacaaaatgtaatCGACAGACGAAGCTTCAGTGTCCTTCGAACGACGAAAATGATTTGGATGACGTCACTCTGGATCAGCGAGAAATAACTACCGTAAAACGTAAAAAAACTGAAAGAAGAGTTGAAAAGAAGAGAAAACCTGAGATTTACGAGTGTGAAACTTGTTCACTCTCTTTTCCACGCAGGGGTTCTTACAAACGTCACATGGTAAAGCACAGTACCGTGAGATCGCACAAGTGCGACGTATGCCAGAAGGCATTCAAGAGGAAATCCGAATTGAAGAGCCATATGCAGCTACACAGCGGTGTAAAGTTCACCTGTGACGAGTGTAACTTTGTAACGACAAATAAGGTGTCGGTGAGAAGTCACGTGCGTCGTGTGCACCAACGAGACTTTCGATACAAGTGCGAACAGTGCGACAAGAGTTTTATGTCGAATTCCGAGCTCAAGGATCACCGTCCCAGCCATCTCGGGACGAAGAGCTTTATCTGCGAAATCTGCGGCAAAGCTTATCTGCAAAAATCGCATCTCGTTGCTCACAAGCGAGTTGTGCACGGGGTAGTGCAAAAGAGCCTCGTAAAAGAGCATCAGTGTAAAATCTGCAACAAAAACTTCGCATCCGAGTACATTTTGCAAAATCACGGTGGCGTTCACTCGCGAAAATTTTTGTGTACTCATTGCGGCAAGGAGTTTGCCACGAATCACGGCCTCCAGCTTCACAGCCGTCTGCACACGGGGGAACGACCGTTTCAGTGCAAATACTGCTCGAAATCGTTCACTCGACCAAACACTCTCAGGCTCCACAATCTCACGCACACCGGCGAACGACCCTACGTCTGCGATATCTGCGGTCAGAGTTTCACACAACGAAGCAGCATGATTGGACACAGAAAGAAACATCCTGGAAGCCATCCGCCACCACCTCCGACCTTCTTGAGCAGATCCGAGAACGTCACTGACTCTCATTCCTAA
- Protein Sequence
- MDDFFRIPKSLCYFIMRHPPIDEKVAADLSSLNKEEDAERKERMKKKSRSLTIEKSILIPEVKIECPSDEELTEVKPLRRRRKRGEKRKRVEIKSNTIACKKTKCNRQTKLQCPSNDENDLDDVTLDQREITTVKRKKTERRVEKKRKPEIYECETCSLSFPRRGSYKRHMVKHSTVRSHKCDVCQKAFKRKSELKSHMQLHSGVKFTCDECNFVTTNKVSVRSHVRRVHQRDFRYKCEQCDKSFMSNSELKDHRPSHLGTKSFICEICGKAYLQKSHLVAHKRVVHGVVQKSLVKEHQCKICNKNFASEYILQNHGGVHSRKFLCTHCGKEFATNHGLQLHSRLHTGERPFQCKYCSKSFTRPNTLRLHNLTHTGERPYVCDICGQSFTQRSSMIGHRKKHPGSHPPPPPTFLSRSENVTDSHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01497672;
- 90% Identity
- -
- 80% Identity
- -