Ccal041431.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012709.1:44274464-44277185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3e-05 0.0027 19.5 1.6 1 23 340 362 340 362 0.98 2 12 0.053 11 8.2 4.8 1 23 366 388 366 388 0.98 3 12 0.00063 0.13 14.2 3.9 1 23 393 415 393 415 0.96 4 12 1.9e-05 0.0039 19.0 2.8 1 23 468 490 468 490 0.98 5 12 0.00093 0.19 13.7 1.4 1 23 495 517 495 517 0.97 6 12 0.00012 0.024 16.5 2.2 1 23 566 588 566 588 0.98 7 12 0.00063 0.13 14.3 0.7 3 23 597 617 595 617 0.97 8 12 1.2e-06 0.00023 22.9 2.1 1 23 628 650 628 650 0.96 9 12 7.3e-05 0.015 17.2 1.0 1 23 656 678 656 678 0.98 10 12 0.00019 0.038 15.9 0.7 1 23 684 706 684 706 0.98 11 12 5.6e-06 0.0011 20.7 2.0 1 23 712 734 712 734 0.96 12 12 0.0001 0.02 16.8 0.3 1 22 740 761 740 761 0.96
Sequence Information
- Coding Sequence
- ATGGCTATGAATACAAACTACTTTGTCCCGCCCGTCAATCTGGACAGAATTTGTAGGGTGTGTCTGCTGGAAGGTACTAATTTATCGCCAATATTCTCAGCTGATCAAGAAGTCGACGATTTTTCTGGACTTTCTCAAAAGATTCAAGTGTGCGGATCGATTGAGATACACGAGAACGACGGATTTCCGTCTCTCATATGCAACGTGTGCATCTATAAGGCGAGTGTAGCTCACGAATTTCGACAACAATGCCAGCAATCCGACACTCGTCTAAGGCTTTTGTACGATAAACCCATAAGATCTAACATTGTCGAATCTTGCACACAGACTGAGCCCCAGACGCGTATAATTCTAACTCGAAAAGTGCCTACACCCCCAGCGACGTACTTCGTGAAGCAAGAGCTGCAGCAGTCGGTGCAGCAAGACTACGTGACCGCGATCGAGGCGTATACGGAAAACCATGAACCGGTGAGAGGAGACCACGCGATGGACTGCCAAGACGACAAGCTCTTTCTCTGTAACATCGGCTTCGAGGGATCGAAAGATATGTCCGACAAAGAAACGAGTATTCTGACCCACGAGGCGCATCAAGTGGACTGTCCTCAGGAACACACGGAACTCACGACAACGTTGATAACCGTAAACGCGAATGGGCAGTTGGAGCAACAAGAGTTGATAGTCAAAGAGGACAGCGGAAAGTGTAACGAAACGGAGATGGAAGAAGAATATCTTAACGAGCAGCTGTTGACTGAAAGCGTGGAGGAATCTGTAGAAGAGGAGCAGCAAGTGGAACACGAAGAACTTGAGGAGCATCAACCTCAGGAGGAAGTGCAGCCTCAACCTCAGGAGGAAGGGCAGCCTCAGTCTCAGGAGGAAGGGCAGCCTCAACCAACGAGGACATCTTTGAGAAAGGCAAAAACGGCAACCGGAAAATCATACAGCGAAGAAGACGAGATTGGCGACGACGATTACTTTGAGGGTTTGGTGAGCGACAACCAGGACTCCGAGGAGCCAAAATTCAAGTGTAACGTATGCTCGAAACGCTACACAACGCAGAAAGGATTGAAAAATCATGCTCAGGTCCACGACAAAAATCACAAGTGCCCAATCTGCCACAAGCTCTTCTTAAAGCTAAAAAACATGGAAAATCACCGGAAGATTCACGCGACAAAGCCTCACGCTTGTCAACTGTGTCACGCGAGCTTCTCCAAGTCTCAGAGTCTCGTTCGGCATCTCAAATCGCACACAGAAAAAGTTAACGATATTATAAAGCAAATTAAGACGGACGATCCTAAGGAAGTCGAGGCTGAGGTTAAGAGTGACGCAAAAAGCGAGGGCGAAACGGATGAAGAAGCTGGAACGAATAACGAAGTAGATGAGTTCGAAAATGCTCCAGGACTTTACAAATGCGAGGTTTGCGGTCAATTCTGCTCTTCGCTGAAAAATTTAAAGAGACACACGCTCGTTCATGGCGACAAGAAGTATTCGTGCACGGTCTGCAAGAAGTGGTTCTTCAGGCCGGACACGCTGAAGAAGCACGCGGAGAAGCATGGACACGGGTTGCTCGACAATCTCGTAGACGACAATAAGTTGTTCGATTCGGACGACGATTCTTTTCCGAATTCGGGCAATACTCCGGTATTGAGCAACGAGACAAGCAAGCGAGACGAGAGCGACGAAGACGGCTTGGGCGAGTACAAATGTCAGCACTGCGATAAAGTAATGGCGACGAAGAAGGGACTGCGAAGACACGTGTCGATGCACAAACCGAAAGCTGAGCCGGTAAACTGCGAAATTTGTAAAAAAGTTTGCGCGAGTCAAGCGCGTTTGGCGTTGCATCTCAAGACTCACAACAAACCAAAGGAAAAAGTGCAGAGGGAGTATCTCTGTCACATCTGCAGTAAAGTTTATCCGAGCAACTCGTCTCTAACCTATCATATGCGGACCCACACGGGCGTCAAACCACACGTCTGTAAAATTTGTAACAGCGGTTTTACAACCACCACGAGTTTGGCTAATCACATTCGCATTCACACGGGAGATAAGCCTTTCGTTTGCCACGTCTGCAGCGCTGCCTTCGCAGTCAGCTCGGCGTTTAGGCGCCATCTGACGAGACACACCGGCGAGGCGAATTATTTATGCAAAACTTGTGGTAAAGCTTTCAAGAGACTGAGTACACTGAAAGAACACACTTATACGCATTCGGGCGAGAAGCCCTACGTTTGTAAAACTTGCGGTGCTGCTTACAGTCACAGCGGTAGCCTCTTTGCGCATCAGAAACGCTGTAGAGTGCAGTACGGTGAAATGGTCGAGGAACACGCGGTAGCTCATCATATTCATGTTAACAACGTGCAGACCGCGGTAAGATCGCTCGCGGTCATTGGCCAGATGTACTAG
- Protein Sequence
- MAMNTNYFVPPVNLDRICRVCLLEGTNLSPIFSADQEVDDFSGLSQKIQVCGSIEIHENDGFPSLICNVCIYKASVAHEFRQQCQQSDTRLRLLYDKPIRSNIVESCTQTEPQTRIILTRKVPTPPATYFVKQELQQSVQQDYVTAIEAYTENHEPVRGDHAMDCQDDKLFLCNIGFEGSKDMSDKETSILTHEAHQVDCPQEHTELTTTLITVNANGQLEQQELIVKEDSGKCNETEMEEEYLNEQLLTESVEESVEEEQQVEHEELEEHQPQEEVQPQPQEEGQPQSQEEGQPQPTRTSLRKAKTATGKSYSEEDEIGDDDYFEGLVSDNQDSEEPKFKCNVCSKRYTTQKGLKNHAQVHDKNHKCPICHKLFLKLKNMENHRKIHATKPHACQLCHASFSKSQSLVRHLKSHTEKVNDIIKQIKTDDPKEVEAEVKSDAKSEGETDEEAGTNNEVDEFENAPGLYKCEVCGQFCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDSFPNSGNTPVLSNETSKRDESDEDGLGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVNCEICKKVCASQARLALHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVEEHAVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01497651;
- 90% Identity
- -
- 80% Identity
- -