Ccal041965.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012709.1:50931523-50939313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.7e-05 0.0035 19.2 1.0 1 23 164 186 164 186 0.98 2 30 0.0033 0.65 12.0 1.9 1 23 209 232 209 232 0.96 3 30 0.00024 0.049 15.6 0.5 2 23 239 261 238 261 0.96 4 30 0.00024 0.049 15.5 0.4 1 21 281 301 281 302 0.95 5 30 0.0026 0.52 12.3 0.1 2 23 399 420 398 420 0.96 6 30 0.0086 1.7 10.7 0.2 1 23 426 449 426 449 0.91 7 30 0.00014 0.029 16.3 0.1 1 23 509 532 509 532 0.96 8 30 0.0096 1.9 10.5 0.4 1 23 538 561 538 561 0.96 9 30 0.18 36 6.5 1.9 1 23 574 596 574 596 0.97 10 30 4.3e-05 0.0086 17.9 0.9 3 23 641 662 640 662 0.96 11 30 0.031 6.3 8.9 1.4 2 23 726 749 725 749 0.94 12 30 6.7 1.4e+03 1.6 0.0 2 23 758 780 758 780 0.83 13 30 0.054 11 8.2 0.1 2 23 787 809 786 809 0.95 14 30 2.8e-05 0.0056 18.5 1.2 1 23 817 839 817 839 0.98 15 30 0.23 45 6.2 1.8 2 23 872 895 871 895 0.88 16 30 0.00025 0.051 15.5 3.3 1 23 898 921 898 921 0.97 17 30 0.021 4.2 9.5 0.8 2 23 928 950 927 950 0.96 18 30 0.0041 0.83 11.7 5.2 1 21 977 997 977 998 0.95 19 30 0.01 2 10.4 1.7 2 23 1012 1033 1011 1034 0.92 20 30 0.16 32 6.7 1.1 1 23 1037 1060 1037 1060 0.95 21 30 1.4 2.9e+02 3.7 2.4 2 23 1067 1090 1066 1090 0.90 22 30 1.2 2.3e+02 4.0 0.2 2 23 1098 1120 1098 1120 0.95 23 30 4.4 8.8e+02 2.2 0.0 2 23 1127 1149 1126 1149 0.87 24 30 0.27 55 6.0 2.7 2 23 1158 1180 1158 1180 0.96 25 30 2.4 4.8e+02 3.0 1.5 2 23 1186 1208 1186 1208 0.92 26 30 0.018 3.6 9.7 0.1 1 23 1265 1288 1265 1288 0.96 27 30 0.00072 0.15 14.1 2.7 1 21 1316 1336 1316 1337 0.95 28 30 0.16 32 6.7 1.2 2 23 1436 1458 1435 1458 0.94 29 30 0.57 1.1e+02 5.0 0.4 2 23 1465 1487 1464 1487 0.94 30 30 0.84 1.7e+02 4.4 2.5 1 23 1498 1520 1498 1520 0.97
Sequence Information
- Coding Sequence
- ATGTACAATCTGGAAAATTTTTACGACTTCAGAACGGCTTGCGTCAACGCGGTTGCCTTGTTGGAGAGGTATCTGCCACCGGGTGGTAATGCTACAGACAGTCAAGTACAAAATGACGTTGAGAATTATTCGGAATTGCGAACGGAGCTTCTCAAGAAGAAGGAAAAGATGCCTATTCTCATACCCGAGGCCCCCATAGTGAATCCTAACGCGGCGCTGGGCACGCCGCCCAGACTGAACAGCGACGGCGAGGCGGATCAGGAGATCGAGGAGATTCTCGACGCTAGCGGTACCGAGGATGGCTTTGAGGATACGGAAGATCGCAAATCGGACGAGTACGAGATGGACATGGAGACGAATCCCAGCGATTTTTTGGAAATGACGCCGATGGTCACCGAAGAATTGGACGAGAGCGAAACGGCGAAAAGTTCGAAAGCCGAGCCACGTAATTCCGATGTCTTTCAGCATACGGCCGAACAACACGAGGTTTATGTTTGCTCGCTGTGCAACAAAGCGTTCAGTTCCAAAGGCCATTTGTCTCTTCATGCGAAGATCCACGTAGGCGCGGGCGACGTTATCGGCGCCAAAGTCGTCACGGACGATCACACTTCGTACAAAAGACCTTATCAGTGCGATCTGTGTAACAAATCTTATTCAACGGCGAAACATCGTTGGGGTCACGTCTCCACGACTCACAGGGGACATCCCGCTGTAACTTGTGCCTATTGCTCGCGGATATATTCGACTCGAACGAATCTCGAGGAGCATATAAAATCGAGGCACACGGGTTTGCCACCGCCCCCGGAGTTGCCGATTCCCTACGTTCAGACGGACAACAGATACAAATGCAAAACATGCCCGAAAATGTATACCACGGTAACGGAGCTCAATAAACACGGAAGAGTTTGCCTGGGCGTACGACCGAAGGAAAAACGCAATAAGAATGAGCCGTGCAAGAGTAAAAGTCTCATCGACACTTCGGATCCGTCGAGCACTGACACCGACAACGACAGCAAGGATTACAGAAACGCTGAGGctaaattatcgaaaaatccGCAACTCACGATTCTCAAACAGGCACTGACGAAGAGCGAAGGTTCGAAGCGAGATTACGAGGATAGAAATGCCACGAATTATAAGCTAGTTGAAATACCGAAGAGAGATGGCAACGAGGGCGATGGTCAGAAGCGATGGTACTGCGAGATTTGTCCGCAGAATTTCTCATCGGTAGAGACGCTGAAGGAGCACGAGACGACGCACGATGCGGACAGGCCTTATATATGCATACTGTGCGAAAAAGATTTTGTTGTAAAATCGTCATTGAGCAGGCATATACTGTCGTCGCACGGTGTCGATCCGAGTCCGATAGTAGACAGCGACAAGTGCTTGAAGAAGACCGTATTGTCACAGTCGTGGACGAAACAGTTGATAAAAAGAGAAGGAAAAAAGAGAGGGAGAAACGGTTCCGTTTCGTCGGAAGATGCCGAGAGCGGGCATGGAAATATGATCGAAATCGAGACGGTATTTGTTTGCGAGATTTGTACCCGCGACTTTAACGACCGTGCCTCATTGTGGCTCCACATTCGGGCGACTCACAAAGAATGCGCGGCGTTTGCGTGTGGTGTGTGTCTCAAAATTTGTTCGGACAATGCCCAGCTTCTTAATCACGTGAATATGTATCACGGGGGCTCGAAACTCTTGGTTTCGGAGCAGCGAAGGTATAGCTGCACGATATGCGGAAGGCAGCATGACTCGAGAAAAAAATTGATGACTCACGTGTCGATACACAACGTCGATCCCGGCTACGATCCCGCGAGcttcgttcaattaaatagcaATTATTATAACGAAAACGTAAATAGCAACGAAGCGAATGAAGGACTGATGGACTTTGATGCCGAGGATACCGACAAGGTTGACTGTTATATTTGTTACAAGTCTTTTCCCAACGAGGATCATCTCATTCGGCATCAACGAAATGCGCACAAGTCCGAGCCTGTGATTCCGAGTGGCGGAGATCCCTTGGCATCCAGCAACGGTTCGGGGACGGGCGTCAACGGCACCAAAGCCCAGTATCACCTGTTCTTCGTTTGCGAATTGTGCGGAAGCTCGCATCCGAGCAAATGGGAGCGTTGGCTCCACGTCAGCAGCAATCACAGCGAAGAGCCATCGATAAGATGCGACCGCGAGGATTGCGGTAAAATCTTCGCTACGAAGACTCTGCGAAACGATCACACCCAGCACCACCTGATCCAAGGCTCCTCGCCCAACACTTGCGAGGTTTGCGGAAAATTGTGGGGCAGTCGAGTGGACTACTGGAAGCACGTAATGGGTGTTCACTCGGACACAGTGCCATTGATATGCGGCGTCTGTCTAAAAGTATTCCCGGACGTGATAAAGCTGAGCAATCATGTTAAAACCAATCACTGGCCTCTTACGAACGGTGACTTTAGCTGCGACGTATGTGGCAGACCCTACTCCAACAAATCCAAAATGTCGCGTCACCGAAAGATTCACGGCTTGGAGCTCGAGAATTCAACGAACAATGGCGTAAACGAGAGATCGTACGAGTCGATGCTATACGAGAAGAGCGCGGTACCTGAGACCGAATTGACTTGCGAATCGTGTACCGATCTCACATTCTACAATTGGGAAAGTTTGTGCAATCATCGCAGATCGATGCACGGCCTCTTTCCCTGCGACCTCTGCAACAAATGTTACGGTAGAACGTCGCATTTATGGAAACATGTGAATCGCGTGCATAAAGGACACCAGGACGTAACTTGTCGTTACTGCATGAAAACTAGTGCCTCCAAGGATCATCTAGCGGCGCACATATCGAAAATTCATCGTTATGAACCCTACAGCAAGCTCGAGATTCGCGAAACCTCGAATTTCAAGCAAACTACCGTCGAGGACGAGGGAGTACATCACTGCGACAAGTGCAACAAGGGCTTTCACAAGCGTTATCTGCTGCGTCGTCACATGAAAGGCTGTCAAAATTATCGAAAAGATCCGGGCGCCTTGCTCACTCGCTGTCGCGCCTGCGAGAGAATATTCAAGGACCGTGCGAGCCTCCAAAAACACGTCGAGAATCATCACagcagctacacctgccacttGTGCAACGAGACCGTAACCTCGAAGCTCGGTATCATGACTCACAATCGCGTCAACCACATGGATCATCCCGACTTGACTTGCGATCACAGCAGCTGCAAAAAGTTGTTGAGAACCAAAGAGGATCTCGAGTCACATCGAAAGGACCACAAGTATCACAACAGCCCGAACGTTTGTGATTTTTGCGGCGACACCGTGGAAAATAAGCTAAAACTGAAGATGCACATTCTCTCGTTGCACAGAAACGAGATTGGGGTTTCGTGCGGCGTTTGTTTGATTCCTATGAAAGACCCGAAGGATTTGAAGAAGCACGTGGAGGACGAACACACCGGTATGCTGCTTAAACCAAACACTTGTCAGGTTTGCGGTAAGCAGTACGCCTCCAAGTGGAAGGCCTTTGATCACACGAAAAAGTGTCACGGCAAAGTATTTCGAACTTGCAAGCAGTGCCTCGCTGTATTTACGACGGATTCGGATATACGTTATCACTACGAGCATTTTCACAACGTTCCGAAGGATCAACTCGCGGGATTCGAGAATCGTATCGACATCAGGTCCGACGATTTCGACAATTCCGACGTCGTAGTCAAGGAAGAACCCGAGGATTACGACTACGAGGATGGAACCTGCGACGACGAGACTTTCGATTTGAAAAGACGAAGGAACGACACCTATGACTGTGATATCTGTCCCGAAATATTTCTCAATCGCGACACGCTCTCCGATCACTACAGAAACGTTCACAACAAGGATCCCCAGAAGATGTTAAAGAAGATGAAGCTCGACGACTCGAACGCCAAGCGAAAAATACGGAATCGCGAGAATTTCGAGTGCAAAAATTGCAACAAGCAATTTTGCACTAAAACGCTGTTTTGGAATCACATTAACGTGTGTACAAGAAGAAACACGAGCAATCGCGAAGAAAATTTGTACCCAACGTCGATTCTCGAGGCTCATCTGaagaataacaataaaattaaaaaggaGCCTCTAGAGACTGCGCTTAACGAATCCAACTTGAATATACCGGATTTCAATCTCTTCGAGGATATTAATATGCAATTTTCCGAGCAAAAGCCGGTGCCGAATCTGATGCCACTGTCGCAGGCTAGACTGTCGAACAGCATCAAGTGTTCGAGAAAAGATTCGCGAAAGGTTTACGACGAGTCGACGAATACCCAGTGTACGTGCGAGGTATGCGGCAAACCGTGGCCAGCGAAGAAGCATCTCTGGCAGCATCTCATCAGGTTTCATCGAGCCGAGGCGGCCGTCACGTGCGGAGTTTGTCTAAAGTTGTGCAGAACTTACGAGGAATTGGCAGAGCATCTTAAAGCCACTCACGAGTCGATACTCTCGTGCGAGGGTAATAATTTCACGTGCAAAACGTGCGGACGTTATCACAACGCCCGTAGCAAGCTCCTGTTGCACATGAGCATTCATATAAATAGCAGCGGCATTGCCTGGTGCCCCAAGTGCGAACAAAGCTTTGAGTGCGAGGAGAAGCTGAACGAGCACTCGTCGATCTGCGACAAGCGACAGCCCGATTACGAGGAGCACAACGTTAACATGGAGCGTGACTCGAAGCTCGAGGACGACGACAAGGGCAGTTTGATCGGAGATGGGGCTTCGCTGACGGGTGAGGGCGATTTTTCTGACCATCGAGCCAGCAATTCAGATCATTCGGAGGACTCGGAGTGTAGTACCGGTGAGAGCGGAAGCGACGATGAAGAAAACGAGGTGGACGACGAGATTGAGTCGAGAACCAACAGTCGAGCGACCGGGGAAGTTAGTTATCGCTCGGAGAGCGAGGAGGAACGGAACTCTGACGATGAAGAGATTCCTGTAATCGAGGAAAAAGAAATTGCGGAGACGGCGAAGCGCACGGAGGAGACAAAGACCGAGGTAAAAGTTGCGGAGGCGTCATCGGCAAATAGCGGCGACGAGGAACAGTGCGAAGATAAGGAAATGAAAATCTTGGATACGGCAGAAATTACCAAAAAGAAAGGTGATGCGGAAGCGGTAACGAAAAATGTGACAACCGCCGACGAATCGGACGACGATGGGCCTCCTATATTGAGCCCGGTGATGCCATTGTCGGTAGAACACGAAGTCGAGGAACGCGACGACGTTGAAGGCCACAAACTCAGTCCGATGGTACCTTTCAAAATAAAAGAGGAAGCAGAAACGAAGATTTTAAACGAAGATGCAGTAGGAGGAACGCAGAAAGATGATATCGAGACTGAAAATTCGGTTTATTACGAGGACGGTGCTTCCGCTGGTAAAGCGTCTACCGGGGAATTGGAATCGGACGAAGAGGCGGGAGCCTCTTCGGTCGAGGATGAGAATGAGGAAATGGACGACGAGGACAGTAGGATTCACGTGGTTAATCCGGACGACGAGTATCATTCAGACGACGACCGTGATCCCGATGAATCTGCTGGCGAAGGAGAGGAAGTTTTCGAGGAAGAACGTTCGGAAATCGAGACGgaaaacgaagaagaagaggatgaaggcgaggaggaggaagaagaagaagaagaagaggaggaggaggaggaggaggacagCGTGCAGATACACAATTTGGACGGCACCGTGCTAATGGTTGCCAAAGACGCTGACGGCAATCAGATATTAATTCAGAAGAATGTTTCCGATATCGTAAACGAGGACTCGATGGAGGCCGTAGCCGGTTTTATTTACGAGGATGAAAACGACTTTGAGGAATTGCGAGGATTTCAAGTGGAACACGGTGGCAGCGAGGACGGTGCGATGGAAGAGGAGAAGGAGATCCGGGAGGACGAGACGCCAGAGGGAGCATCGGAAGAGGAGGATGTTCAGGAGGACGAGACGATGGAgatggaagaggaggaggaggaggaggaggaggaggaggaggaggaggaggagggacTCTTGGAAGGGGCTACAGAGGGTCAGAGGAACGAGGAAGAGGAATCGAGCGAACACGAGGACGAAAAAGAAGTTGAGGAAGAGGAGGTTGAGGAAGAGGAAGATAAAGAAGACGAGGAAAGTGATGTACAGGATTCTAATACGAGTGCCAAAACCGATGTGTCAAGGACGTAG
- Protein Sequence
- MYNLENFYDFRTACVNAVALLERYLPPGGNATDSQVQNDVENYSELRTELLKKKEKMPILIPEAPIVNPNAALGTPPRLNSDGEADQEIEEILDASGTEDGFEDTEDRKSDEYEMDMETNPSDFLEMTPMVTEELDESETAKSSKAEPRNSDVFQHTAEQHEVYVCSLCNKAFSSKGHLSLHAKIHVGAGDVIGAKVVTDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRTNLEEHIKSRHTGLPPPPELPIPYVQTDNRYKCKTCPKMYTTVTELNKHGRVCLGVRPKEKRNKNEPCKSKSLIDTSDPSSTDTDNDSKDYRNAEAKLSKNPQLTILKQALTKSEGSKRDYEDRNATNYKLVEIPKRDGNEGDGQKRWYCEICPQNFSSVETLKEHETTHDADRPYICILCEKDFVVKSSLSRHILSSHGVDPSPIVDSDKCLKKTVLSQSWTKQLIKREGKKRGRNGSVSSEDAESGHGNMIEIETVFVCEICTRDFNDRASLWLHIRATHKECAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLMTHVSIHNVDPGYDPASFVQLNSNYYNENVNSNEANEGLMDFDAEDTDKVDCYICYKSFPNEDHLIRHQRNAHKSEPVIPSGGDPLASSNGSGTGVNGTKAQYHLFFVCELCGSSHPSKWERWLHVSSNHSEEPSIRCDREDCGKIFATKTLRNDHTQHHLIQGSSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIKLSNHVKTNHWPLTNGDFSCDVCGRPYSNKSKMSRHRKIHGLELENSTNNGVNERSYESMLYEKSAVPETELTCESCTDLTFYNWESLCNHRRSMHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHQDVTCRYCMKTSASKDHLAAHISKIHRYEPYSKLEIRETSNFKQTTVEDEGVHHCDKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHVENHHSSYTCHLCNETVTSKLGIMTHNRVNHMDHPDLTCDHSSCKKLLRTKEDLESHRKDHKYHNSPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHTGMLLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDSDIRYHYEHFHNVPKDQLAGFENRIDIRSDDFDNSDVVVKEEPEDYDYEDGTCDDETFDLKRRRNDTYDCDICPEIFLNRDTLSDHYRNVHNKDPQKMLKKMKLDDSNAKRKIRNRENFECKNCNKQFCTKTLFWNHINVCTRRNTSNREENLYPTSILEAHLKNNNKIKKEPLETALNESNLNIPDFNLFEDINMQFSEQKPVPNLMPLSQARLSNSIKCSRKDSRKVYDESTNTQCTCEVCGKPWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCRTYEELAEHLKATHESILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINSSGIAWCPKCEQSFECEEKLNEHSSICDKRQPDYEEHNVNMERDSKLEDDDKGSLIGDGASLTGEGDFSDHRASNSDHSEDSECSTGESGSDDEENEVDDEIESRTNSRATGEVSYRSESEEERNSDDEEIPVIEEKEIAETAKRTEETKTEVKVAEASSANSGDEEQCEDKEMKILDTAEITKKKGDAEAVTKNVTTADESDDDGPPILSPVMPLSVEHEVEERDDVEGHKLSPMVPFKIKEEAETKILNEDAVGGTQKDDIETENSVYYEDGASAGKASTGELESDEEAGASSVEDENEEMDDEDSRIHVVNPDDEYHSDDDRDPDESAGEGEEVFEEERSEIETENEEEEDEGEEEEEEEEEEEEEEEEDSVQIHNLDGTVLMVAKDADGNQILIQKNVSDIVNEDSMEAVAGFIYEDENDFEELRGFQVEHGGSEDGAMEEEKEIREDETPEGASEEEDVQEDETMEMEEEEEEEEEEEEEEEEGLLEGATEGQRNEEEESSEHEDEKEVEEEEVEEEEDKEDEESDVQDSNTSAKTDVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00653028;
- 90% Identity
- -
- 80% Identity
- -