Ccal009869.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012704.1:13295959-13299259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00041 0.083 14.8 2.5 1 23 22 44 22 44 0.98 2 13 2.3 4.7e+02 3.0 1.2 2 23 51 76 50 76 0.86 3 13 0.00026 0.053 15.4 0.9 1 23 82 105 82 105 0.98 4 13 4.6e-06 0.00092 21.0 0.6 2 23 112 133 111 133 0.97 5 13 0.00013 0.026 16.4 3.8 3 23 141 161 139 161 0.96 6 13 1.6e-07 3.3e-05 25.5 0.5 1 23 167 189 167 189 0.98 7 13 0.041 8.3 8.5 3.7 1 23 224 246 224 246 0.96 8 13 8e-05 0.016 17.1 1.5 1 23 746 768 746 768 0.97 9 13 8.4e-05 0.017 17.0 0.3 1 23 775 798 775 798 0.93 10 13 2.7e-05 0.0054 18.6 0.1 1 23 806 829 806 829 0.97 11 13 0.00012 0.024 16.5 6.5 1 23 835 857 835 857 0.98 12 13 0.0016 0.33 12.9 5.4 1 23 863 885 863 885 0.98 13 13 2.9e-07 5.8e-05 24.7 0.7 1 23 891 913 891 913 0.98
Sequence Information
- Coding Sequence
- atgaatgcCACTGATGACCCTCAAGCTATTTCGTTGATagatacaaataaaatatttacgcCGTTCCATTGTTCCATATGTGGAAAAGAATTTTCTAATGAGAAACGATACTTTGGTCACTTGAGAGTTCACAGCGGAGAAGTTTTGTGGTCTTGCAACAAATGTCCGCAATCTAGTGTAGCGTTCGATTCTCAGTCAAGGCTGAGAACGCATGAGAATTTGTGTCACACGCTAGTCAGgccttacaaatgtttaaagtgcGATAATGTGTTCGACAGGGCTTCCCAGCTCGATTATCACAAGCGTAGCGTTCACCTGGGTGAGAAATCTCAGGTGTGCCAAATCTGTGGAAAGGGATTCTTTCGAAAAACTGATCTCCGCACTCATCTCAATGTTCATCTGGGCACTAATCAATCAATCTGTGAAATTTGTGGAAGAAAGTTCAATCACGTTTCAAATCTCATCAGACACTGCAGAACTCATGCAGGCTCCAAACCCTATCCTTGTACAATTTGCGGAAAAAGATTTACGCAGATTAGCTCATTGGCCAGGCACAAACGAATACACTCGAGAGAATCGAATACATCCATTAGTGAGAATTGCGACGATAAGCTTTCAGCGAACAACGATAAGCCAAAAATTGAAGAGAAGAAGATCGTAAAGCGGCAACATTACTGTAGAGTATGCGGCGAAAGTTTTCAATTTATGGTCCTACTCAGACAGCACGAAAGACATCATTCCAAGACGGCGGTAAATTATGATGATAAAAGCTATGGAAAAaGTCAGGAACGAGAATCGAGCAGCCATAAGAATCTCCAAGAATTGGAGCAAAGTAACGAAATACTATCGTCTTCCGAAAACCCTAGGCAATCGAACGTGAGCGATTGGAAAGATTTTCACACGGAAGATGAAAGACTCCTCGACGACAATGCCGACGAACCAACGGAAGAGGAAACGGATAAATCCATTCGTGACCATCTTCTGGAATTGGATTGCAAGATGAACGCGATAGAAATAGAATCGGAGCGTGACGTCAGTATCAGTATATCCGATATTCTGAGTCCTTACAATTGTGACGAAATTGAATTATCAAACGCTGATGGTTTGGAACCAAAATTGTATGAAAATTCAAACACTGTAAATAAACACGACGCCTTGGAAAAAGAATACGACATAGTGCAATGTTTGAACGGTGTAGATTTCACTTCGAACATAGATTCTCAATTATTAGAAGCTTCTATAGATAAAAATGCGGCAAAGTGCAACAGCGGTCGTCTAAAATCTCTATCGAAAGATCTTAAAATTTCCAAATCCAAACCACTTGCATCGCTAACAAGAGATCAGTACAATAAACGTCTTCACGTCGAGGGCAGTCAATTATACATCGAAATTTGCGAGTCTGAATATCTCAAAAGTTCCAACTTGCACGCGTTAGAATTACAAGAAATCGAGAACGTCGCTCTCTTTCGAGAAGTTTTTGAGTCTCCGGAGGACGATGAATCAAAATGTTCGAGAACGAACATTCAGAAAGTAGCTGCGGTTAAATCTTCCAAGAATGTCGAAAATATAGACGTTAGAGTACCAGATAATACCAGAATTTCCACAGAGACTGGAGATCCAAGTCTGTGTCTGGTGCAGACAGAGACGGGAGAACCAAGTCTGCGTCTGGTGCAGACAGAGACGGGAGAAAAGTTTTACGAATTGCTGATTAACAATAAATGCACCGATGATTTTGAGAATCTTGAGGTGGCGGAGGAAGGTAAAGCCGAATCGATCGACCAAGTTGATATTGAAAATAGTTCACCGTTGCCCGGTTGCGGAGATGATAGTCAAGCAGACAAAATTGAAAGACAATTGGAGGATCATGATGAGTTCGCGAATGAATCAAGCTGTAACGAATTCTTTCAATTGCTGCCCAACACTGAGAGTTATAGCGAAATACATACAGCGGTGCATAACGATATGTCGATGCCTATGGTACGTCTCGTGCAGAATGAGGATGGCGAGCAATTTTTCGAACTGATTCGAGAGCCATTGGAGTACGAGCGGAATCGAGAAGAGCGAATTATTGAGTATCCGCGCGACGAGAAGATTACGGAACTTCCGTCCAATTCCAATAATCCGAGCTTTCTGAATAATACAAAAGCCGCGATAAGCACGAATTCGGGAATCAAGAGAGATAAGAAGGAATGTACCGCAGAGAATATACGTCCTACGAAAGATCGAACGCGAAAATTTCAATGCACCGAATGCGACAAGTGGTTCTCCACGTCCTACAATTTTAAACAACACGCCGGTACGCATTTCTCCGATCAGCAAAAATTTCAATGCAAAGATTGTGGCCTTTCGTTTGCGTGGAAATCAACACTGAATAAGCATCTGGCGGGTAATCATCGACCGGACGGACCGCAGAAATTTGTTTGCGAAATTTGTCCGAAAGTCTACAGCACGCTCTCTCAAGTAAACGAACACGTGAAGAGGGATCATCTCAAGGAGAGGAATCACGTGTGTGGGCATTGCGGGAAAtcgtttttcaaaaaattcgacCTGAAAACCCACAGTAGAACGCACACAAACGAACGGCCGTACGTATGTCGAGCGTGCGGCAAGAGATTCCATCATCAGAGTCACATAATACGACACGAGCGTATTCATTCGGGCGAACGACCGTACGCGTGCGACATTTGTCAGAGAACCTTCACGCAACCGAGCTCGCTCAAGGCTCACAGACAGAGGCATCGGGACGTTAAAATCGATATTCTCGAGTATCGTATGGACGAGGATGATCCTCTGTCGCTGGCTGTGCAATAG
- Protein Sequence
- MNATDDPQAISLIDTNKIFTPFHCSICGKEFSNEKRYFGHLRVHSGEVLWSCNKCPQSSVAFDSQSRLRTHENLCHTLVRPYKCLKCDNVFDRASQLDYHKRSVHLGEKSQVCQICGKGFFRKTDLRTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGSKPYPCTICGKRFTQISSLARHKRIHSRESNTSISENCDDKLSANNDKPKIEEKKIVKRQHYCRVCGESFQFMVLLRQHERHHSKTAVNYDDKSYGKSQERESSSHKNLQELEQSNEILSSSENPRQSNVSDWKDFHTEDERLLDDNADEPTEEETDKSIRDHLLELDCKMNAIEIESERDVSISISDILSPYNCDEIELSNADGLEPKLYENSNTVNKHDALEKEYDIVQCLNGVDFTSNIDSQLLEASIDKNAAKCNSGRLKSLSKDLKISKSKPLASLTRDQYNKRLHVEGSQLYIEICESEYLKSSNLHALELQEIENVALFREVFESPEDDESKCSRTNIQKVAAVKSSKNVENIDVRVPDNTRISTETGDPSLCLVQTETGEPSLRLVQTETGEKFYELLINNKCTDDFENLEVAEEGKAESIDQVDIENSSPLPGCGDDSQADKIERQLEDHDEFANESSCNEFFQLLPNTESYSEIHTAVHNDMSMPMVRLVQNEDGEQFFELIREPLEYERNREERIIEYPRDEKITELPSNSNNPSFLNNTKAAISTNSGIKRDKKECTAENIRPTKDRTRKFQCTECDKWFSTSYNFKQHAGTHFSDQQKFQCKDCGLSFAWKSTLNKHLAGNHRPDGPQKFVCEICPKVYSTLSQVNEHVKRDHLKERNHVCGHCGKSFFKKFDLKTHSRTHTNERPYVCRACGKRFHHQSHIIRHERIHSGERPYACDICQRTFTQPSSLKAHRQRHRDVKIDILEYRMDEDDPLSLAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -