Ccal002302.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- -
- Assembly
- GCA_963942595.1
- Location
- OZ012703.1:10495585-10500466[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0066 1.3 11.0 0.1 2 23 209 231 208 231 0.91 2 18 3.2 6.4e+02 2.6 0.5 1 23 243 266 243 266 0.92 3 18 0.046 9.2 8.4 3.9 1 23 279 302 279 302 0.91 4 18 0.0033 0.66 12.0 6.4 1 23 308 330 308 331 0.94 5 18 0.075 15 7.7 0.4 3 23 338 359 336 359 0.94 6 18 0.00085 0.17 13.8 1.5 1 23 364 387 364 387 0.98 7 18 1.7e-06 0.00033 22.4 0.7 2 23 394 415 393 415 0.96 8 18 2.1e-06 0.00041 22.1 2.2 1 23 421 443 421 443 0.96 9 18 8.4e-05 0.017 17.0 1.0 1 23 449 471 449 471 0.98 10 18 0.00026 0.052 15.5 9.1 2 23 584 605 583 605 0.96 11 18 1.1e-05 0.0022 19.8 0.6 1 23 607 630 607 630 0.97 12 18 0.0017 0.35 12.9 2.1 1 23 633 656 633 656 0.96 13 18 0.00028 0.056 15.4 3.1 1 23 662 685 662 685 0.96 14 18 0.0014 0.28 13.2 2.0 2 23 692 714 691 714 0.95 15 18 0.00035 0.071 15.0 0.4 1 23 719 741 719 741 0.96 16 18 0.00081 0.16 13.9 0.5 3 23 749 768 748 768 0.98 17 18 4.3e-05 0.0086 17.9 0.1 1 23 774 796 774 796 0.96 18 18 0.00031 0.063 15.2 0.7 1 23 802 824 802 824 0.97
Sequence Information
- Coding Sequence
- ATGAGAAAGTGGCAGATCTTGGAGTTCGATGGGAAGCCATATTACGCATTCGTACCCGAGGACGATGATCCTTTAAACACGGACAAGATACCGAGTCTGGATAGAACCGAGGAATTCGAGTTGAGGGACGAATCGTCGCAGCAAGATGTAATTTACAACGAGGAGTTGGACGAGAGTTACGAGGATCAATACAATTACGAGTCAGATGTGAATAACGAGTTCAGCCTAGACGAGGATGATGAGATTGTACAGCACGAGATAAAGCCCGTGGTATCGAACGGTACAAACGGAAATGAAAATACTCTGGGTGATCTGTATCAAGTAAAGATGGAGGGCACTGTGGTAACACTGGAGAAAGTATCGGAAAACGTGGTGAACACCAACCAAATCATTGAACTATCCAAGTTGGTAAAGGAAGAGCCGCCTCAAGAGGTACCCGAGTCGTACACGAACGTGCCGTCGGAAGAAATCGTCGAAACGGAGAACGTCCTCGGGAACGTTTCAATGGAGGAAGACGAGGTGGAGGAATTGCCGAAGTCGTCGAGAACACCGTCGCTACGGCAGCGCAAGGCTCGACGAATCGACAGAGTCTCCACGATTACGAAAACAATCGTAGGACCCCTGAAATGCAAAGTTTGTTCCGAAACGTTTGGTTCGGCGATAGCGTTCAGAAAGCACGTTGCCTGGACGCACAAGAAGAAGGTGTGCATCCAAGAAAACGGCGTTTTCATATGTGCGGTTTGTGACTTTAGGACCTTGAAGAAGTCTCTGTTCGCCGATCATTTGGAGAGAAAACACGAGACCTGGACGAGAAAGCGCGAGATAAGCTTAATGTTTCCTTGCGATGCTTGCGGATTCGTCTGTCGCTCGAAACACTCGCTTCAGTCCCATTTTGTAAGAAAACACACAGATTCGTACGAACACAATTGCCAATTTTGTACGAAGAAATTCAAGGTGAAGGGAGACTTGACGAATCACGTGCGCTTTCATCACAAGGAGAAACCGATTAATTGCGACGTATGCGGGAGACTTTGTCAAAACACGGGCTCCCTCTACGTACATCAGAAATGGGCTCATTACAAACCCAAGTACGAGTGTCACATATGCAAGAGGCGAATGGTGACCCAGGAGAATCTTGATCAACATCTGCTAACGCAACACGAGCAACGAGAGAAAATCGTTTGCGCCCGGTGCGGCAAGACATTCACGAAGAAAGATTCGTTCAAGCGTCATATGGCTGTGCACACGGGCAACAAACCGCATCACTGTCCTATATGCAAGAAACCTTTTGCTCGCCAGTCTCAACTCAGACAGCACGTACTTATTCACACTGGGCAACGACCATTCGTGTGCGATATCTGTGGCAAGGGATTCACGCAGAAGCCCGGACTCATTTGTCACAGAAAAACGCATCCCGGCCCGCTTCCGCCATTGCCTGTGATGCCAATCGCCGATCTCGTCAGAGAATTTATCGCGCAGAATGAGGAGAATCAGAGTAAGGATCTGGACCTGAAAAATTCGCATTTGGATCCGCTCAGCCTGGTGAAGAACATAAACTCAGTCGGATGTACCTTGGAATGTACGATACATCCAATCTCGAAGAGGATAAAGTTAGAGTTTGAAAACGGGACTCATCGCAGAAGTTCAAGAAGCGTCAAGAGAGAACGTACGAACGATGATTTCCAACAAGATTCGAGCCGATCACCGGTGAATATCATTCCCAAAATTTCGGCACAAAGAACGTGTTGCGTGTGTCATCATTGCAACAAGAAATTCAACAGAAAGAGCAAGTTGATCGAACATCTGAAGCAACACAGGTACACGTGTACGGAATGCCCAAAGACTTTTAGTCTGAGTCGCTATCTGGAATCTCATATCGACAAAGTGCATAGTATTCACGAATGCAGCGTCTGCGATTATAAGAGCAATAACAAAGGAACCCTCAAGAATCATTACATAAGGCTACACACGAGCAATTTCGAATATTCGTGCGACACGTGCGGCAAACAGTTTAAGATTAAAAAAGCTCTGAATCATCATGTGAAACAATATCACAGCGGTGCTCTGCCAATAGTCTGCGACGTATGCGGCCACTTCAGCAAGAATCTTCATGCTCTGAAAGCTCACATGAAGTATCGCCATTATAAACCCGAATTTGTGTGCAAAATCTGCAATCGTGGCATGACGACGAAAGAGAATCTCGAGCAACATCTCACGTGGCACGAGACGAGGGAAAAAGTGCTCTGTCCGACTTGCGGGAAGAGGTTTCGGGGCCGTGATCTTGATTCACACATGAGGGTTCATACGGGGGTAAAACCGTTCGCCTGTCCCGTCTGCGGAAAGAATTTTAGACGTCAGACTGCTCAGGAACAACATGTTCTTATTCACACTGGCAAGAGGCCCTACGTCTGTGACATTTGCGGTCAATCTTTCGCGCAAAAACCTGGTTTGATTTGCCACAGAAAAAGACATCCCGGACCATTGCCACCGCTACCGATTGTTTCGGTTAAAAATATCGTCACTCAATTCACCAGAGAATACGCGAATAAAAATAATGGCGTCAATCTCGAATGA
- Protein Sequence
- MRKWQILEFDGKPYYAFVPEDDDPLNTDKIPSLDRTEEFELRDESSQQDVIYNEELDESYEDQYNYESDVNNEFSLDEDDEIVQHEIKPVVSNGTNGNENTLGDLYQVKMEGTVVTLEKVSENVVNTNQIIELSKLVKEEPPQEVPESYTNVPSEEIVETENVLGNVSMEEDEVEELPKSSRTPSLRQRKARRIDRVSTITKTIVGPLKCKVCSETFGSAIAFRKHVAWTHKKKVCIQENGVFICAVCDFRTLKKSLFADHLERKHETWTRKREISLMFPCDACGFVCRSKHSLQSHFVRKHTDSYEHNCQFCTKKFKVKGDLTNHVRFHHKEKPINCDVCGRLCQNTGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEQREKIVCARCGKTFTKKDSFKRHMAVHTGNKPHHCPICKKPFARQSQLRQHVLIHTGQRPFVCDICGKGFTQKPGLICHRKTHPGPLPPLPVMPIADLVREFIAQNEENQSKDLDLKNSHLDPLSLVKNINSVGCTLECTIHPISKRIKLEFENGTHRRSSRSVKRERTNDDFQQDSSRSPVNIIPKISAQRTCCVCHHCNKKFNRKSKLIEHLKQHRYTCTECPKTFSLSRYLESHIDKVHSIHECSVCDYKSNNKGTLKNHYIRLHTSNFEYSCDTCGKQFKIKKALNHHVKQYHSGALPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCKICNRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFACPVCGKNFRRQTAQEQHVLIHTGKRPYVCDICGQSFAQKPGLICHRKRHPGPLPPLPIVSVKNIVTQFTREYANKNNGVNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -