Ccal002344.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- chn_1
- Assembly
- GCA_963942595.1
- Location
- OZ012703.1:11201641-11207942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.027 5.4 9.1 0.2 2 23 411 432 410 432 0.95 2 24 2e-06 0.0004 22.1 1.0 1 23 442 464 442 464 0.99 3 24 3.2e-06 0.00064 21.5 1.1 1 23 470 493 470 493 0.95 4 24 0.00041 0.083 14.8 0.9 1 23 499 521 499 521 0.98 5 24 0.0019 0.39 12.7 5.5 1 23 527 549 527 549 0.96 6 24 0.00097 0.2 13.7 4.1 1 23 555 577 555 577 0.96 7 24 0.0064 1.3 11.1 1.1 1 23 583 605 583 605 0.98 8 24 1.6e-05 0.0033 19.2 1.5 1 23 611 634 611 634 0.97 9 24 0.00021 0.042 15.7 0.2 2 19 705 722 704 724 0.95 10 24 0.0029 0.59 12.2 0.8 1 23 787 810 787 810 0.93 11 24 0.00028 0.056 15.4 1.6 1 23 839 861 839 861 0.98 12 24 1.1e-05 0.0022 19.8 1.4 1 23 867 890 867 890 0.97 13 24 5.2e-06 0.0011 20.8 0.4 1 23 896 918 896 918 0.98 14 24 3.8e-07 7.6e-05 24.4 0.6 1 23 924 946 924 946 0.99 15 24 0.00012 0.024 16.5 0.2 1 23 952 974 952 974 0.98 16 24 6e-05 0.012 17.5 1.7 1 23 980 1002 980 1002 0.97 17 24 8.2e-06 0.0017 20.2 0.9 2 23 1009 1031 1008 1031 0.96 18 24 6.9e-05 0.014 17.3 2.1 1 23 1090 1112 1090 1112 0.99 19 24 0.047 9.4 8.4 0.3 3 23 1120 1141 1119 1141 0.90 20 24 0.074 15 7.7 0.6 1 23 1147 1169 1147 1169 0.98 21 24 5.7e-05 0.011 17.5 4.8 1 23 1175 1197 1175 1197 0.94 22 24 0.001 0.2 13.6 0.4 1 23 1203 1225 1203 1225 0.97 23 24 0.00031 0.062 15.2 2.0 1 23 1231 1253 1231 1253 0.96 24 24 0.02 4.1 9.5 1.2 1 23 1259 1282 1259 1282 0.88
Sequence Information
- Coding Sequence
- ATGGGAGAACCTGTAATTTTTGTACAATCCGGAAACATCGTATCCAGCGACACAACAAGAAGTACAAATTCTGACAAGACATATACAGAACTGAAAAGAATGGAGTACGAGGAAACTTCCTTGGAAAATTACAAACAGAGTGAGACGACCAAGGAAACTTCCAACTGGAAGGAAACTTGCAGAATCTGTGCAAATGCGAGGGATCGTACGATACCGATATTTGAAAGCGAGGGAAGTGAACACAAGCTCAGCAACAAAATTCACATGTACCTTCCTATCGAGGTTTCCGAAACCGACAGCTTGCCTCTTAAACTCTGTTATCACTGCGCAGCAACGCTGTTAGCATGGCACGAGATTGCCACTGGCTGTTTAGATGCTCAGAAAAGACTTTTACAGATGCAATCTGAGATCCAACAGAAAGAACCGAGTCAATCGAAAGACCCAAAAAATTCTTGTTCCGATGGAATCGTCAAAGAGATTATTACTGCAAGGGAAGAATCGGTTAACGATTATCAATCAATTGCGACTCAAAAATTGCAAAAGTCAAGCTTACTTCCGTCGAGCCATGAGATTCAAGAAAAAGAAGCGAATCAATTAAAAAACAttgaacaattgaattcaaacgAACTGGTACAAGGAAATATTGCTGCGAACGAACTAGTCGACGACCCTGAACCAATTGCAACGGACAAATTGGAAATTTCGAACGTAGCGCAAAAGAAGAAAGAATCGAGTCTAATTCATGAGCAGGAAGAATCATGCGTAACCCAGCAATTGGAACAAACGAGGGATAACGTAGAACAATCCACTGTTAACCAACAACCGGCAGAAAGGTCCGATAGAATGAAGAAGCCATTTAAACTGTTGATTGGCGCGCAGAGTATATTTCGAATGGGGAGAAAAATCAAAATCGAAGTTACAGACGACAAATCTGTTAAGAAAGACGATGAAGATACGATGTTGAAGAACACGTTGTGCCCCAGTGTCGAGGAACGTTTGTCGATGATGGATTCACCGGGCCCTGCAATCGAGGGACTCAACAGTGCCGAGGAAACATTTACGAACGCCGAGGAAAGTCGACGGAATTCGGCGAGAAGCGAGAAAGTCAAGAACGAAACGTTTGCGGAGTACGAAAGAGTTTATGCGGAAAAATCTGAAGATTCTCAGGATCGCGAATCAATGACGACAGACGAATCTAATTCAAATGACAATTGCACGTCTATAAAAGTTAAATGTACAGTTTGTTCGCGGGAATTCTCTGCCATAAAGGATCTCCAGATTCACGCGAAAGATCATAAAGATTTACCGGAATTGCGAAAAATATATCAGTGCGTTGAGTGCGACAAGAGCTTTCGTCTGAAAGACTCTTTCGTACGTCATTTGAGAATCCACCGAGACGAGAGGCCGTTTACTTGTCACGTTTGTGGCAAACAATTTCGGGATTCCGGTGGCCTCTCGAGACACCTCAAAGATGTTCACGCCAAGCTAAAGAACTTTTCCTGCGACATTTGCGGCAATAGCTTTTCCTCGAAAGCAACGCGGGACGATCATCGGCGAACTCACACTGGCGAGAGACCTTACGTATGCAACACCTGCAAGAAAACCTTTAAATCCAAAGCCTGTCTCTACAGCCACAACAAACTCCACACCAATGAGTTTCCGCATTCCTGCACTTACTGCAATAAGAAATTTCGTCGTCGACAAGAGATGCTTGTACACGCGACGACGCACACGGGAGAAAAGAATTACAGCTGCGACGTGTGCTTCATGCGATTTCGCGTCAAAACCGAAGTGGTTAGACACAAACTGACGCACTCCGAAGAGAAACCTTTCGTATGCGCTAAATGTGGTCTAAGATTTCGGCAAAATCGTTATCTCAACAATCATATTAAATCGAGACACGTGCAATCTGGAGCGACGAGACAGACAAGATTCGCAACTCTCATTGGAAAACGGACAGACGTGTCTCCGGGAACTGGATCCAACGAGTTCACGAGCGCCGAAAGATCGAACCAGCCCAAGCGACGAAACTCTGAGCTTTCAGCCAAGAAGCGAGACGCGAAGGTCGTAAAGGACAATAATCGAAAAAACTCGGAAGCAGGTAGACAGATTTCCTGCGAAAAATGTCGGAGAGTATTCATAAGGGAGTCAAATTTGAAGCGGCACTCTGTCAATTGCGGAGGAAAGCGACAAAATGTCGAATCGATCGACTCGCTGCAGGAAACGCAGATGGAAGAAGTACAGGAAGAGGTCAATGTGAACGATACAGAAACCTACCGCGTCGTGGAAGTGACAGAGACGGGCGAAGCTCATTCTTCGGACGAGcccaaaatctcgagaaagacAAAACTAAAGAGTTATCCTTGTCTCTACTGTGACTACACGACGCGAAAAAAGAAATTGCTGGAACAGCACACGATCGAGCTTCATTCGAATACATCGGGAAAAAAACAGCAGAGCTCCGAGAAGGATCTCGTGAAACGAGCAAAAATGGAAGCCAACGGTCGTGTGTATTATCATTGCAACGATTGTGGCAAAAATCTCTTTTCACCCTACACATTCACCTGGCACGTGAGAATTCACACGGGCGAGCGACCGTTTACTTGTCATGTGTGCGGAAAACAATTCCGCGTCAATCAGGGTCTCGCTCGTCACCTCCGCGAAACTCATGCGGGAATTAAGAAATTTCCTTGCGATCTGTGCGGTCGAATGTTCTCGACAAAGCGAAACGTCGAAGATCACAGACGAATACATACCGGCGAACGTCCGTATGTCTGTAACGTGTGCGGCAAAGCTTTCAAGCAAAAAGCCTCGCTCTTCGTGCACAACCGCACGCACACGGATTTTTTTCCATTCACGTGCAGCTACTGCGGGCAAGGGTTTCGCACGAGACCACCGCTCGCCATCCACATCACCAAACACACCGGCGAAAAGCCGCATACTTGCGACATCTGCGAACGCGCTTTTCGCATAAAGTACGAACTTAAGCGTCATCGGCTTATACACTTTGATGAGAAACCTTGGCAGTGCACTGACTGTGGTCTCTCTTTTCGACAGAAGCGCTACTTGGTTAATCATAAGAGAATCAATCACGGCTGCGGCTCAACGATCGCAGAAGCCGACGTTAACTTCGAATCACGAGTAACGAAGGACGATCTCGTTTCAGGTGGCGTAATAGaaaaaccaTTGACGAAACGAAATAAACGAACTCCGGAGCAACAACTCGAATTAACCAAGTCGCGGATTATCAAGGACAGCACGACGTTCTACAAATGTCGAGACTGCGAAAAGCTTTTCTCGACAGCGTATAATTTTCTCGTTCATCGAAAAAGTCACAGCCGTGAAAGGCCTCACGGTTGTCGCGAGTGCGGCAAAAGTTTCGGCTCCGTTTCCATACTTCAGAGACACAATAAAGATGTTCATTTGGGCAGAAAGAATTTTCCCTGCGATCTGTGCAATCGTCGTCTCGCCACAAAGATATCTCGAGACGAACATCGAAGAACTCACACCGGCGAGAGACCCCACGTTTGCGAAACCTGCGGCAAGTCCTTCAGACAAAAGTCGTCTCTCCACGTGCACAAACTTTTTCACACGTCTGACTTTCCATATCCGTGCTCGTCGTGCAAACTCGCGTTCAGAAGGAAGCAGGATCTTGATAAACACGCGTTGGTGCATACGGGTGAGAAACCTCACGCGTGCGAAATTTGCGACAAACGCTTTCGTACGAGTGGTATTCTCAGTCGTCACAAAAATACTCATAGCAGTGTGAAACTGTATGATTGCGAGGAATGCGGCTCGAAATTTAGTCAAAAACGTTATCTCAAGTTCCACGTGAGCAATATCCACGGATTTGCGGTAATGAATTCTACTGCCGAGTCGTCTCTTCTCACGTCCAAGTGA
- Protein Sequence
- MGEPVIFVQSGNIVSSDTTRSTNSDKTYTELKRMEYEETSLENYKQSETTKETSNWKETCRICANARDRTIPIFESEGSEHKLSNKIHMYLPIEVSETDSLPLKLCYHCAATLLAWHEIATGCLDAQKRLLQMQSEIQQKEPSQSKDPKNSCSDGIVKEIITAREESVNDYQSIATQKLQKSSLLPSSHEIQEKEANQLKNIEQLNSNELVQGNIAANELVDDPEPIATDKLEISNVAQKKKESSLIHEQEESCVTQQLEQTRDNVEQSTVNQQPAERSDRMKKPFKLLIGAQSIFRMGRKIKIEVTDDKSVKKDDEDTMLKNTLCPSVEERLSMMDSPGPAIEGLNSAEETFTNAEESRRNSARSEKVKNETFAEYERVYAEKSEDSQDRESMTTDESNSNDNCTSIKVKCTVCSREFSAIKDLQIHAKDHKDLPELRKIYQCVECDKSFRLKDSFVRHLRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFSCDICGNSFSSKATRDDHRRTHTGERPYVCNTCKKTFKSKACLYSHNKLHTNEFPHSCTYCNKKFRRRQEMLVHATTHTGEKNYSCDVCFMRFRVKTEVVRHKLTHSEEKPFVCAKCGLRFRQNRYLNNHIKSRHVQSGATRQTRFATLIGKRTDVSPGTGSNEFTSAERSNQPKRRNSELSAKKRDAKVVKDNNRKNSEAGRQISCEKCRRVFIRESNLKRHSVNCGGKRQNVESIDSLQETQMEEVQEEVNVNDTETYRVVEVTETGEAHSSDEPKISRKTKLKSYPCLYCDYTTRKKKLLEQHTIELHSNTSGKKQQSSEKDLVKRAKMEANGRVYYHCNDCGKNLFSPYTFTWHVRIHTGERPFTCHVCGKQFRVNQGLARHLRETHAGIKKFPCDLCGRMFSTKRNVEDHRRIHTGERPYVCNVCGKAFKQKASLFVHNRTHTDFFPFTCSYCGQGFRTRPPLAIHITKHTGEKPHTCDICERAFRIKYELKRHRLIHFDEKPWQCTDCGLSFRQKRYLVNHKRINHGCGSTIAEADVNFESRVTKDDLVSGGVIEKPLTKRNKRTPEQQLELTKSRIIKDSTTFYKCRDCEKLFSTAYNFLVHRKSHSRERPHGCRECGKSFGSVSILQRHNKDVHLGRKNFPCDLCNRRLATKISRDEHRRTHTGERPHVCETCGKSFRQKSSLHVHKLFHTSDFPYPCSSCKLAFRRKQDLDKHALVHTGEKPHACEICDKRFRTSGILSRHKNTHSSVKLYDCEECGSKFSQKRYLKFHVSNIHGFAVMNSTAESSLLTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -