Ccal023307.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- lola
- Assembly
- GCA_963942595.1
- Location
- OZ012706.1:11336635-11339981[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8 2.2e+04 -3.3 0.1 4 20 102 118 101 119 0.73 2 2 1.2e-08 3.3e-05 25.0 0.1 9 40 405 437 404 442 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTTAGGTGGAACAATCACCAGAGCACGCTCATACAAAACTTCGACACACTCCTTGAGAGCGGCACGCTGGTTGACTGCACCCTGGCGGCGGAGGGGAAGTACCTTAAGGCCCACAAAGTCGTCCTCTCCGCGTGCAGTCCGTACTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCACCCTGTCTTTATATTAAAGGACGTTAAGTTTAAAGAGCTAAAAGCCATGATGGACTACATGTACAGGGGAGAAGTAAATATCTCCCAAGACCAATTGGCAGCACTCCTAAAAGCCGCTGAATCCCTACAAATAAAAGGGCTCTCGGAAAGCAAAACGGGCGGCGGTACCGGCAGCAAGACGGCAGAGTCATCGAGGCCACAACAGAAAGTCGCACCACAGCCTACGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAGCAAAGTTCCTAGGCAGAGTATGGCACAGGGCTCCGTAAGTGACCTACCCGAAGACTCGGCCAGTCCTCAACTACCTAAGGGGCTCTCCTCCAGGGAAGGCTCGCAAAGTCCAAcctcaagaaaaagaaagagGTTCAGAAGAAGAAGCGTAGGCGACAACTCAATGGAAAATCACGAAGCGTCGAACTCGAGTGACATGCCACAACAACTGAGCGTACCGTCACTCGGTGTTGCTCCGGTTGCGGACGAAAAGTCTCACACCGATCCCACAGACTCCCTCGGCAGGTCGGCTCTCATGCAGCAGCTGACCAAACCTGCCGATGAAATGCTTCAGTTGCCACTCGAAAAACCAGAGCCTACCGATAGCTTGATCGAGCCAAAGTCCGAGTACCTGGAGGAAAACGAAGAAAGCGTCGAAGACCTGACGCTCGACGATGACATGAATGACCTCAATGAAATGGAACAAGACAACAACAGAGCCGGCCCATCCCACGATCCCTCCCAACATCCTGGTGGGGGGGCGGGATCGCGGTCTCGTACTTCGAGAGGTGGTAATTCGGTTGTTGGCGTCGGCGGTGAGGCCCACTGGGCCTCCCATTTCCTCGATTGTCATAAAAAGGCCACGAACACGAGACGACCGCGTCCAGACGTTGACGTAGCCGCGTTGCTCAAGTCGCTGGCCAACAAGCAGGGCCGAAAGTATAGTTTAGACTCTGTTAAAATGTCCCTGGAAGCTATATTGCAGCAGGGCGTTAGCACCACTCACGCATCGGAGATGTACGGCATTAATCGCTCGACACTGCAGTTCtatctgaaaaaattgaatgtCGTGAGACGACGGTGGAGACAACCGACTACCCTTGTACCGCATACACAGTCTTAA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGGTGSKTAESSRPQQKVAPQPTAPSLDIPHASSGLTIEKNSKVPRQSMAQGSVSDLPEDSASPQLPKGLSSREGSQSPTSRKRKRFRRRSVGDNSMENHEASNSSDMPQQLSVPSLGVAPVADEKSHTDPTDSLGRSALMQQLTKPADEMLQLPLEKPEPTDSLIEPKSEYLEENEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAGSRSRTSRGGNSVVGVGGEAHWASHFLDCHKKATNTRRPRPDVDVAALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPTTLVPHTQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266562;
- 90% Identity
- iTF_00459675;
- 80% Identity
- iTF_00414420;