Ccal043248.1
Basic Information
- Insect
- Cylloceria caligata
- Gene Symbol
- lola_1
- Assembly
- GCA_963942595.1
- Location
- OZ012710.1:16882333-16884061[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-14 6.5e-11 43.2 0.1 1 45 365 409 365 409 0.96
Sequence Information
- Coding Sequence
- ATGTCGGATATGGGGGCGGCGGGAGAACAGCAGTTCTGCCTTAGGTGGAACAATCACCTATTAAACTTCATACAGGCGTTCGAGGGCCTGCTGGAGGAGGAGACGTTCGCCGACGTGACCTTGGCCGTCGAGGGTGTCATTCTAAAGTGTCACAAGGTGGTATTGGCAGCGTGCTCGGCGTACTTTAAGACGCTCTTTTCCGAAGTGCCATGCTCGCACCCCGTTGTTTTTCTCAAGGACGTTAAAGCCAGTGAGATCAAAACGATACTGGAGTACATCTACAAGGGTGAAGTGCACGTCGCTCGGGACGATATAGCGGCTATGACGAAGGTTGCAAGGATGCTGCAGATCAAGGGTCTCATGGACACCGACATTTCGTTTCTTTTGGCGCAGAAGCTCAATGAGGAGATACCGAACGAGGAGGCCATCAGCACGAGTACGACCAGCAGTCACAACGCTCCCGCTTCGGATCACGGCGGAGGTATTCCTGGCGGTGGAGGTTACTCGTCTCCTCCTCACTCCACGAGTTCGCCGTACTATGGCTATAAAAAATCGCCGAAGGCTCGTGAAACAGGCGCGGGATATCCATTGCCCGTTTGGGCACTCCCGCAAGAACTTCCGCAGGTCGGCAAGAATCCAGCGGCGGTATCCGCGGCTCCGCATCCTCCTTTAGCTGTTAGACCATCCTCTATATTCGGAAGTCTCTACGAAAATGCGGCCGATGCCTCGACCGCGCATCGCCACCGGAAAATATCGATACTCCGAAATCACGATACGCCGATACTCCGAGGTGTTCTCGGAGGTGTACACGCCGACAGTTCTCAAGCAGCGCAGCGTATTTCATCCGATGGACACGAATCCCATTATCAAAGTCACAGCAACGGATCCACTGACAATGGCTCCGACGGCAGACGCGGTAGCATGGATCTGTCTAAAGGGCATCACGCTCACAACCCTTATGCGACTGGTGCTTCAATGATGGACGAAGACGAGAAGAAACTCTTGCCTCAATCATTTTCTAACGACAAAAAAACAGCTATAGCCAACTACGTGCCATCACAAAAACCCGAATGGAAGCGTTACAAGCAGTATACCAGAGCTGATATTGCGAATGCTATTGCAGCTGTCAGAGGCGGCTTAAGCGCACTTCAAGCGGCCCGAAAATACGGAGTACCCTCGAGGACTCTCTACGACAAAGTAAAGAAACTGGGAATAACGACCTCGAGACCCGGCAGACGTACGAGCAATGGTAGCAGTGCCTGCTTTCCGTACGGCGTCGGTGGCAATGTTAACGGCAATATCTACAACAATACTTCAGGAAACGACACGGATACCGGCGGTGTAATGATGGAGAATCCATCGGCGGTATTGGAGACCTCCTACGCGGAGAGTCGCGACAATTCGATGGATCGCGAAACCTTGATGGATCAAACGAGAAGTCCCAGCCCTCCGCTTGCCCTTTGCTACCAACCTCCGCCTCTGCCACCGCCGCCGCTACAGCATCAAGAATCACCGAATGTGGAGAGCGACAATGAGGTTGAGGATCTCTCGGTGACTCGTAGATCCGATGTACGCGTTATAATGCCACCGAGCGTAACCATCAAAGAGGAAATATAG
- Protein Sequence
- MSDMGAAGEQQFCLRWNNHLLNFIQAFEGLLEEETFADVTLAVEGVILKCHKVVLAACSAYFKTLFSEVPCSHPVVFLKDVKASEIKTILEYIYKGEVHVARDDIAAMTKVARMLQIKGLMDTDISFLLAQKLNEEIPNEEAISTSTTSSHNAPASDHGGGIPGGGGYSSPPHSTSSPYYGYKKSPKARETGAGYPLPVWALPQELPQVGKNPAAVSAAPHPPLAVRPSSIFGSLYENAADASTAHRHRKISILRNHDTPILRGVLGGVHADSSQAAQRISSDGHESHYQSHSNGSTDNGSDGRRGSMDLSKGHHAHNPYATGASMMDEDEKKLLPQSFSNDKKTAIANYVPSQKPEWKRYKQYTRADIANAIAAVRGGLSALQAARKYGVPSRTLYDKVKKLGITTSRPGRRTSNGSSACFPYGVGGNVNGNIYNNTSGNDTDTGGVMMENPSAVLETSYAESRDNSMDRETLMDQTRSPSPPLALCYQPPPLPPPPLQHQESPNVESDNEVEDLSVTRRSDVRVIMPPSVTIKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414438;
- 90% Identity
- iTF_00414438;
- 80% Identity
- iTF_00414438;